K34619

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K34619

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34619

Determination of introduced cDNA(s)

  • J013069I08 - Rice Full-length cDNAs - Original: J013069I08

    full reading [+] show sequence

    Nucleotide sequence: J013069I08 - full reading 
    GATATATAGG TAGAGAGCAG AGCATATGCA GAGCAGGGGA AGGGGCGAAG 
    CGTACTCCTT CCCTGCAGCT GCTTCCATCA ATACAATACA ACTAGTGATT 
    TCGTTGCAGT GATCCTTTCT GTCGATGGCG CAGCAGCAGG GGCAGGGGGC 
    GGGTACTACT ACAGTGGCGA TGATGAGCCG GAACCCGAGC TACTACTACT 
    CCGGCGAGGG TGAGCTGAGC CTGGCGGTGC AGCGGCAGGA CTCGCTGTAC 
    AGGGACGCGA GCCGCGCCGG GCAGCATGAG CAGGCGCATG GCGAGGGGTG 
    GGCGCGCACG CTGCGTCTGG CCTTCCAGTG CTTCGGCGTC CTCTACGGCG 
    ACATCGGCAC CTCCCCACTC TACGTCTACT CCACCACCTT CGACGGCGGC 
    ATCCGCCACA CCGACGACCT CCTCGGCGTC CTCTCCCTCA TCATCTACAG 
    CTTCCTCCTC TTCACCATCA TCAAGTACGT CTACATCGCC CTCCGCGCCA 
    ACGACGACGG AGACGGCGGC ACTTTCGCCC TCTACTCCCT CATCTCCCGC 
    CACGCCAAGG TCAGCCTCGT CCCCAACCAG CAGGCCGAGG ACGAGCTCCA 
    CCTCCACATC AGCAAGTCCT CCTCGCTCCG CCGCCCCTCC GTCCAGCGCC 
    TCGCCTCCAC CGCCGAGGAG CGCGCCCAGT GGGTCAAGGA CCTCCTCGAG 
    AACAGCCGCC CCGTCCGCAT CTCCCTCTTC CTCCTCACCA TCCTCGCCAC 
    CGCCATGGTC ATCAGCGACG CCTGCCTCAC GCCCGCCATC TCCGTCCTCT 
    CCGCCGTCGG TGGCCTCAAG GACAAGGCGC CACACCTCAA CACTGGTGGT 
    GTGGGTGACG GTGGGCATCC TGGTGATGCT GTTCGCGGTG CAGAGGTTCG 
    GGACAGACAA GGTGGGGTAC CTGTTCGCCC CCGTCGTTTT GCTGTGGCTC 
    CTCCTCATCG GCGGCGTCGG GGTGTACAAC CTCGCCGCCC ACGACGTCGG 
    CGTCCTCCGC GCCTTCAACC CAAAGTACAT CCTCGACTAC TTCCGCCGCA 
    ACGGACGCCA CGGCTGGGTC TCCCTCGGCG GCGTCCTCCT CTGCTTCACC 
    GGCACCGAGG CACTCTTCGC CGACCTCGGC TGCTTCAGCA TCCGCTCCAT 
    CCAGCTCAGC TTCGCCTTCG GCCTCGTCCC GGCCGTGCTG CTGGCCTACG 
    CCGGGCAGGC CGCCTACCTG CGCGTGTACC CGGACCACGT CGGCGACGCC 
    TTCTACGCGT CGACGCCGCA GGTGCTGTTC TGGCCAACCC TGGTGCTGGC 
    GCTGGCGGCG TCCGTGGTGG GCAGCCAGGC CATGATCTCC TGCGCCTTCG 
    CCACCATCTC CCACTCGCAG GCCATGGGGT GCTTCCCGCG CGTGAAGGTG 
    GTGCACACGT CCAGGCAGTA CCAGGGGCAG GTGTACATCC CGGAGATCAA 
    CCTCCTGCTG GGCGCGGCCG CCTGTGTGGT GACGGTGGCG GCGCGGGACA 
    CGGTGGTGAT CGGCGAGGCG CACGGCATCT GCGTGGTGCT GGTGATGCTC 
    ATCACCACGC TGCTGCTGAC GGTGGTGATG GTGCTGGTGT GGCGGGTGAA 
    CATCGGGTGG GTGCTGGTGT TCGCCTGCGT CTTCGCCTCC ACCGAGTCGG 
    TGTACCTGAC GTCGGTGCTC TACAAGTTCG CGCACGGCGG GTACATACCG 
    GTGGCCATGT CGGCGGTGCT GATGGGGGTG ATGGGGGTGT GGCACTACGT 
    GCACGTCAGG AGGTACAAGT ACGAGATGGA GAGGACGGTG TCGACGGAGA 
    GGGTGAGGGA GCTTGTGTCT CGGAGGGAGC TGCAGAGGGT GCCCGGTGTG 
    GGGCTCTTCT ACACGGACCT CGTGCAGGGG ATCCCCCCGG TGTTCCCTCA 
    CCTCATCGAC AAGATCCCCT CCATCCACAC CGTCCTCCTC TTCGTCTCCG 
    TCAAGCACCT CCCCGTCCCG CACGTCGACC CCTCGGAGCG CTTCCTCTTC 
    CGCCAGGTGG AGCCGCAGGA GCACAAGCTC TTCCGCTGCG TCGCGCGCTA 
    CGGCTACCGC GACCGCCTCG AGGACGCCCG CGACTTCGTC GCCAACCTCG 
    TGGAAAGGCT GCAGTACTAC GTGCGGGACG TCAACCTGTA CGGCGCCGCC 
    GCCAATAATA AGGTGAGCTA CCCGAGCTCT CGTTGCGACA GCATGGGCAT 
    ACCCAAGTCG GCTTCCTACG CGGAGAGGCT GCAGCTTCAG AGGGCCAGGT 
    CGGTGGCCAT GCTCCACTCG CATTCTCAGC ATCAGCAACA GCCTCTGCCT 
    CAGCAGCTGG GCCAGCTGCT TCAGTACTCG GCATCCACGG GAGAGCAGCA 
    GCGCCGCTCC GTTTACGCGG AGGAGATGCT TACTCCGGCG GAGTCGTTCT 
    CGGAGATGGG GACGATGGCG GCGAGCGGGC GGCAGCTGAT GGCGGTGGCG 
    GTGAAGATGA GCCTGGAGGA GATGGCGCGG ATCGAGGAGG AGCAGCGGTT 
    CATACAGAGG GAGATGGAGA AAGGGGTGGT GTTCATCCTC GGGGAGAGCG 
    AGGTGGTGGC GAGGCCTCAC TCCTCCCTCC TCAAGAAGCT CGTCGTCAAC 
    TACGCCTACT CCTTCCTCCG CCGCAACTGC AGGCAGGGCG ACAAGATGCT 
    CGCCATCCCC AGGAGCCAAC TCCTCAAAGT CGGCATGTCC TACGAGATCT 
    GATCGATCTC TCATGCATCC CCCATCCATT CCTTCATAAG CAAACCTTCC 
    TTAATTATTG CTTTCATTTC TTCTTCCTTC TTCATTATTT CAATCTCGAT 
    CCATCTACTC TACTACTAGT TCTTCATTTC TTCTCTGCTA CTCCAGTATA 
    CTCAACTGGT TATGGTTAGT ACTAGCAGCT AAGCTAAGCT AAGCTAGCTT 
    CATAACTATA AGTGCCTTTA TTGATGCATG CATGCCAGTA TATATAGTGA 
    TCATATATAT ACATACACAT ATACTAGCGG AGGAGTATGT AACTAGTTGC 
    TAGTATTGCT GATTGATAAT TAATTGTACA ATTGGATGCA TGGGATGGGA 
    GACCACTGAA TTGATCCAGG TTCTTCCTAC ATGTTTGTAT GTATGTATGC 
    TTGTAGAAGC TTGCACAGAT ATATTGATCA TATGATTGTC AATTCCTTGT 
    TGC

    Gene models with high sequence identity

    1. AT4G13420.1 [+] show detail - high affinity K+ transporter 5
      E-value: 2e-168; Score: 185.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam K+ potassium transporter 1.5e-59
    HMMPfam K+ potassium transporter 1.1e-199

    See the detailed result >

    AT4G13420.1

    Model type
    Protein coding
    Short Description
    high affinity K+ transporter 5
    Curator Summary
    Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels.
    Computational Description
    high affinity K+ transporter 5 (HAK5); FUNCTIONS IN: potassium ion transmembrane transporter activity, potassium:sodium symporter activity; INVOLVED IN: potassium ion transport; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: Potassium transporter family protein (TAIR:AT1G60160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR