K34728

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34728

Determination of introduced cDNA(s)

J033027O12 - Rice Full-length cDNAs - Original: J033027O12

full reading [+] show sequence

GTGGGATTAG GTCCACCAGT AGCTTCACTG TACATAACAG AGGTTTCTCC 
TCCTTCAGTG AGGGGCACAT ATGGGAGCTT TGTTCAGATT GCAACCTGCC 
TTGGAATCGT AGTATCTCTC CTAATTGGTA CACCTGTGAA GGATATTGAT 
AGATGGTGGA GGGTGTGTTT CTGGGTTGCA GCTGTTCCAG CAACTTTACA 
AGCTCTTGGA ATGGAGTTCT GTGCTGAGAG CCCCCAGTGG CTGTATAAGT 
GTGGAAGAAC GACTGAAGCA GAGATACAAT TTGAAAAACT TCTAGGTCCT 
CTTCATGTTA AGTCTGCTAT GGCAGAACTC TCCCGATCTG AAAGAGGCGA 
TGATGGAGAA AATGTGAAGT ATTCGGAATT GTTTTATGGT CGCAACTTTA 
ATGTTGTTTT TATTGGCACA ACGCTCTTTG CTTTACAACA GTTATCCGGC 
ATAAATTCTG TGTTCTATTT CTCATCAACT GTGTTCAGAA GTGTGGGTGT 
GCCCCCTAAC CTTGCGAACA TATGCATGGG GATAGCAAAT TTATCAGGCT 
CAATTGTAGC TATGCTTCTA ATGGACAAAC TAGGAAGGAA AGTACTTCTT 
TCAGGGAGCT TCCTTGGCAT GGCCTTTGCA ATGGGACTTC AGGCTGTTGG 
AGCAAATCGT CACCACCTTG GTTCTGCAAG CGTATATCTT TCAGTTGGTG 
GCATGCTATT GTTTGTCTTG ACATTTTCGT TAGGAGCAGG TCCAGTGCCA 
GGACTTCTTT TGCCTGAGAT TTTCCCAAAC AAAATACGGG CCAAGGCTAT 
GGCTCTGTGC ATGTCCGTGC ATTGGGTGGT AAATTTTTTT TTGTCAGTTT 
GTTGTTCTTG CGGCTTCTGG AGCAACTTGG TCCACAAGTT CTGTACACAA 
TGTTTTCCTC AGCTTGTGTG GTAGCAGCAA TATTTGTGCG GCGCCATGTG 
GTTGAAACAA AGGGAAAGAC TTTGCAAGAG ATAGAAGTTT CGCTTCTACA 
AACACAATAA AGATTTCATC AGCGAGTTTG AGGCAACAAC AACCTACATG 
ATTAGCATCT GACACTATAC TTGTTGCTGA ATACCTGCTG GGAAAGTCTA 
CCGTGAAAGT TGATCACTGA ACCAAGCCAA CATACCACGG ACAGGCAGCG 
CCCTACACTG GACCAGGGAA GTACCCAGAC ATGCACCTGT GACCAGTAAG 
GGCGACCTAG CTCGTGCATA AACCATCCAT GTAGTGAGGT TGCATCTGTA 
TAGTTGGTCT TCTGCTAGAT GTATCTGGTA ATCTGTGTTG TCTTCATCAT 
TTGTCATTTG TACACTGTCA GTATGGAGAA AAAAAGACGG GAAGTGTGGT 
TACTGATGGC CATAGTTTGA ACCGTGGATA CGTTTTTTTT ACTGTTTAAA 
GAGGAATAAC AGCACTGGCT CTGCCAGCTA CATGAAAATA AAGTGCGTTC 
TGCCTGAGCT

Gene models with high sequence identity

AT1G67300.1 [+] show detail - Major facilitator superfamily protein
E-value: 3e-108; Score: 62.80

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SUGAR TRANSPORTER (HEXOSE TRANSPORTER)	2.9e-104
HMMPanther	SUGAR TRANSPORTER	2.9e-104
ProfileScan	MFS	20.565
PatternScan	Sugar transporter, conserved site	0
superfamily	Major facilitator superfamily, general substrate transporter	2.1e-33
superfamily	Major facilitator superfamily, general substrate transporter	8.8e-07
FPrintScan	Sugar/inositol transporter	4e-10
FPrintScan	Sugar/inositol transporter	4e-10
FPrintScan	Sugar/inositol transporter	4e-10
HMMPfam	General substrate transporter	2.1e-61
HMMPfam	General substrate transporter	2.5e-05

See the detailed result >

AT1G67300.1

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), Sugar/inositol transporter (InterPro:IPR003663), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G79820.2); Has 41411 Blast hits to 40853 proteins in 2427 species: Archae - 690; Bacteria - 24236; Metazoa - 4821; Fungi - 7159; Plants - 2674; Viruses - 2; Other Eukaryotes - 1829 (source: NCBI BLink).
Link: InterPro Scan - TAIR