K35023

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35023

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35023

Determination of introduced cDNA(s)

  • J023047L02 - Rice Full-length cDNAs - Original: J023047L02

    full reading [+] show sequence

    Nucleotide sequence: J023047L02 - full reading 
    GATTTCCCCT CCCTCTCTCT CTGAATTTCT TTCTCCCCAA ACCAAAACCA 
    AACCGAAGCT TCCCCATCTC GCGTGAACTT CGGAGCAAGG AAGAACAAGG 
    CGCCGCGCCG GATTTAGCCC CGCCCCCCTC TCCGGGGTAT CCCCCCTCCT 
    CTCCTCTGGG TTTGATTGGA GTGAGGTGAA TCGGTGAGGT TGTGGCTCGG 
    TTGGCGTCCG GATCGGAGGG GGTTCGGGCC CTTCCTGATT AATCCCTCTT 
    CTGATTCCGT GTGGGGGATT CAATCACTGG TGGGCAAAGG CGAGATATTT 
    CGTCACTTCT CCCCCTCATC TAACCATGTC TGGTTTGATG TGCCTGGAGA 
    TCAAGATGGG ATTGTAACCA CGCTGGTTAT CTCGCGATCG CAGAGGGTTT 
    CCTCCATCCT CTAAGGAAGG AAAGGAACCC TTGCCCTTTC TTCTCCATGG 
    CTTCTAATTC GTAGTGTGAA GGATCTGATT TTTAGGTTAG TGTAAATAGT 
    AGCAGTAGTT GAGGAAGCTT CGGCATCCTA AGGACCTCCT GTGAAGATGT 
    CGTCTGCTGC CATTGCCATT AGCCCGATGG TGGAAGAGTT TGCTCTCCTG 
    CCCATCTGCT TCGACGGCAG CCGGTCGCCC CACTGTTTGT CCGGGTCACA 
    GCTGCAGGAT TCGATTATCA TCTTTCTTGC TGTGCCTGGT GCCCCACCGA 
    TGCCGATGAG TGTGCTCGGC TCGGAGTCCA TCGCCTCGGT CAAGCTGCGC 
    ATTCAGCGGT TCAAGGGGTT CGTGGTTAAC AAGCAGAGGC TTGTGCTTGA 
    TGGGCACGAG CTGGCAAGGA ACAACTGCCA TGTGAAGGAT TATGGGCTTG 
    CCGATGGAAA TGTTCTGCAC CTTGTTATCC GCTTGGCTGA TCTTCGCTTG 
    ATTAACATCG AGACTACCAG TGGAAAGAAG TTTCAGTTCC AGGTGGACCA 
    GAGCCGCAAT GTCAAGTATC TCAAGAGTAA GCTGGCAGTG GAGGGAGATG 
    AGGACCTTGG TGAGGATCAC AAGCTTGAAT GTGATGGCAA GGAGCTTGAG 
    GACCACCAGC TGATTGCTGA TATTAGCAAG AAGGATGATG CTGTGATCCA 
    TTTGTTCATC CGCAAGCCAG CAAAGTTACG GACACAGCAA GTTGATAAAG 
    ACACGGTGGT TACAGTTGTC ACTCCGCAGG AGAAAGAGAA CCTTCAAAAT 
    GAAGCTCATG CTGTGAACCC TGCTAAACCA GCTGGTGCTA GGCCTGCTCT 
    TGTTGAACCA ATTATCGTTA ACCACAAGGT GAAGCTATCA CTTGAAGTGA 
    TGAGAATGAT TAGCTCAGCC ATAGCTGGTC TTGAGAATGG ATACTTGCCA 
    GTGATGACAG CTGAAGGTTC AGGGGGTGTT TACTTCATGC AAGATGCATC 
    AGGAGAGAAG AATATTGCAG TGTTTAAGCC CAGAGATGAG GAACCTATGG 
    CTAAAAACAA CCCAAGAGGG CTTCCAGTGT CGACTGATGG AGAAGGCATG 
    AAGAGGGGGA CGCTTGTAGG GGAAGGTGCA TTTAGGGAAG TTGCTGCTTA 
    TATTCTTGAC CATCCAATTG GTGATCATGA ATCTGAAGAA CGTATCGGGT 
    TCTCTGGTGT GCCTCCCACA GCATTGGTCC GGAGCTTACA CAGGGGGAAG 
    AGCTTCAAGA TTGGATCACT GCAGATGTTC ATTCAGAACA ATGGAAGTTG 
    TGAGGATATG GGTCCCCGAG CATTTCCAGT GAAGGAGGTC CACAAAATAG 
    CAGTGTTAGA TCTTAGGTTA GCAAACGCTG ATCGTCATGC AGGGAACATT 
    TTAGTGTGCA AGGATGAAGA AGGTGGCAAT TACAAGTTGG TTCCAATTGA 
    TCATGGTTAC TGCTTGCCAG GGAAGTTTGA AGATTGTACC TTTGAGTGGC 
    TGTACTGGCC CCAGGCTCGT GAACCATTCA GTGATGAAAC CATTGCATAC 
    ATCAAATCAC TAGACGCTGA AGAGGACATC AAGCTTCTCA AGTTCCATGG 
    GTGGGAGCTG TCTGCAAGAT GTGCTCGTGT CCTGTGCATC AGCACCATGC 
    TTTTAAAGAA AGGTGCAGCA CGAGGCCTCA CACCGTATGA CATCGGGCGT 
    ATACTGTGCA GGGAAACTGT GAATAGAGAC TCTGAGATTG AGGACATCGT 
    CCAGGAAGCC GAGGGCCATG TTCTCCCAGG GTCAAGTGAA GTAATCTTCT 
    TAGAAACCGT ATCTGAAATC ATAGACCGTC ACCTCGACAA GAAGTTCGCT 
    TAGAAACCCA GAATAACTGA TCTAGTTGTT CAGCTGTATC CAGTCAGTTT 
    GGTGTAAGTA TGTTGACAAG CCACTCTTCA ATGGACTAAA TGATTTCATT 
    TGTTTGTAGC ATCTCAAACC TTCAAGTGCA TTACCTACAT ACATTTTGTG 
    AATATGTAAG CATGTGTTGT GTGTTGGTCG TGCGCATCAT CAGCATGGTA 
    CTGTCTGAGA GACGAAATAA AATGTTGATT TAGTGCTGTT

    Gene models with high sequence identity

    1. AT2G46500.2 [+] show detail - phosphoinositide 4-kinase gamma 4
      E-value: 5e-171; Score: 598.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Ubiquitin supergroup 13.097
    ProfileScan Ubiquitin supergroup 12.618
    superfamily Ubiquitin-like 4.3e-14
    superfamily Ubiquitin-like 4.3e-13
    HMMSmart Ubiquitin 0.19
    HMMSmart Ubiquitin 2.4e-05
    HMMPanther gb def: T17H3.7 4.2e-16
    HMMPanther FAMILY NOT NAMED 4.2e-16
    Gene3D no description 2.1e-08
    Gene3D no description 1.9e-08
    HMMPfam Phosphatidylinositol 3-/4-kinase, catalytic 4.1e-42
    HMMPfam Ubiquitin 1.3e-13
    HMMPfam Ubiquitin 4.6e-07

    See the detailed result >

    AT2G46500.2

    Model type
    Protein coding
    Short Description
    phosphoinositide 4-kinase gamma 4
    Curator Summary
    Phosphoinositide kinase which undergo autophosphorylation and phosphorylate serine/threonine residues of protein substrates. Contains phosphoinositide 3/4-kinase and ubiquitin-like domains. Phosphorylates PUFD1 and RPN10 in vitro.
    Computational Description
    phosphoinositide 4-kinase gamma 4 (PI4K GAMMA 4); CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (TAIR:AT5G24240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR