K35030

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35030

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35030

Determination of introduced cDNA(s)

  • J013022M19 - Rice Full-length cDNAs - Original: J013022M19

    full reading [+] show sequence

    Nucleotide sequence: J013022M19 - full reading 
    TGGCAGTCGC AGCCTCTTTC CTCCTCCGTC TCTCTCTCCC CTCTTCCTCT 
    CCTCCGCGCG GCGAACGAAG CGAGCGAGCG GCGGCCATGG AGCGGCTGCA 
    GCGGATCTTC GGGGCGTCGG GGATGGGGCA GCCGCCGACG GACTCGCCGC 
    TGCTCGACTC CTCCGAGCAG GTCTACATCT CCTCCCTCGC CCTCCTCAAG 
    ATGCTCAAGC ACGGGCGGGC CGGCGTGCCG ATGGAGGTGA TGGGGCTGAT 
    GCTCGGGGAG TTCGTCGACG ACTACACCGT CAGGGTGGTC GACGTCTTCG 
    CCATGCCGCA GAGCGGGACG GGCGTCAGCG TCGAGGCCGT CGACCACGTC 
    TTCCAGACCA ACATGCTCGA CATGCTCAAG CAGACCGGGA GACCAGAAAT 
    GGTGGTGGGC TGGTATCACT CCCATCCTGG ATTTGGATGT TGGCTTTCAG 
    GTGTTGATAT CAACACTCAG CAGAGTTTTG AAGCTTTAAA TCCCAGGGCT 
    GTTGCAGTTG TGATAGACCC AATCCAGAGT GTCAAGGGGA AGGTGGTCAT 
    TGATGCATTT CGTCTCATTA ATCCTCAGAC CATGATGCTT GGCCAGGAAC 
    CGCGACAGAC AACATCAAAT GTTGGGCATC TAAACAAACC ATCTATCCAG 
    GCTCTTATTC ACGGGCTGAA CAGACACTAC TACTCCATTG CAATCAATTA 
    CCGCAAAAAT GAACTGGAGG AGAAAATGTT GCTTAACTTA CACAAAAAGA 
    AATGGACCGA TGGATTGATT TTGAAGAGTT TTGACACTCA TTCGAAAACC 
    AATGAGCAGA CTGTTCAGGA AATGCTGAAC CTAGCCATCA AATATAACAA 
    GGCAGTGCAG GAGGAGGATG AGCTGCCACC TGAGAAACTA GCGATTGCCA 
    ATGTGGGACG GCAGGATGCC AAGAAGCACT TGGAAGAGCA TGTCTCAAAT 
    TTGATGTCGT CAAACATAGT TCAGACCCTA GGAACCATGC TCGACACGGT 
    TGTGTTCTAG TCTCCTTCTA CTGTTGTGTC AACCCTATAC AGACCCCCAC 
    CCAAATTATT ATTTATGTTT ATCGAAGCCT CTGCCGTAAT TCTGTAACTT 
    TTGGTGCCAG CTACATTTGG GTTCTAACAG TTCGACTTGA AGAATTTGTT 
    TTCTTTTAGC ACGGTGTACT GTTAATCTTC TGTTGATTTC GCTGCATTTT 
    CAAGGTTCCA TCACTTGATG

    Gene models with high sequence identity

    1. AT5G23540.1 [+] show detail - Mov34/MPN/PAD-1 family protein
      E-value: 4e-149; Score: 524.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 26S PROTEASOME REGULATORY ATPASE SUBUNIT 5e-214
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -R 5e-214
    HMMSmart Mov34/MPN/PAD-1 4e-49
    HMMPfam Mov34/MPN/PAD-1 1.3e-34
    superfamily JAB1/MPN domain 5.2e-23
    ProfileScan Post-SET domain 8.348

    See the detailed result >

    AT5G23540.1

    Model type
    Protein coding
    Short Description
    Mov34/MPN/PAD-1 family protein
    Computational Description
    Mov34/MPN/PAD-1 family protein; INVOLVED IN: response to salt stress, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9-signalosome 5B (TAIR:AT1G71230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR