K35039

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35039

Determination of introduced cDNA(s)

J033124G19 - Rice Full-length cDNAs - Original: J033124G19

full reading [+] show sequence

CATGAACCCA AGCCACATCT TAGCTTAATT ACATAGCTCC TCCTCCTTTC 
TCCACTGACT GCTCAGTGTG TTTTGCATCT CTCCATTGAG CAAGAGGAGA 
AGGGAGGCTC AGCTAGCTAG CTAGCTACCA TCTATACTAG TATCAAGTTT 
TTTTGTTCAG ATTTTTTTGT TGGAGGAAGA GTTCTAGGGA GATCGATATG 
GCCTTCATGT CCATGGAACG CAGCACTTGG GCCTTCACCT TTGGCATCTT 
AGGTAACTTA ATCTCACTAA TGGTATTCCT TTCGCCACTG CCGACGTTCT 
ACCGGGTGTA CCGGAAGAAG TCGACGGAGG GGTTCCAGTC GACGCCGTAC 
GTGGTGACGC TCTTCAGCTG CATGCTGTGG ATGTACTACG CGTTCGTCAA 
GTCCGGCGCC GAGCTGCTGG TCACCATCAA TGGTGTGGGG TGCGTCATCG 
AGACCGTCTA CCTCGCCATG TACCTCGCCT ACGCCCCCAA GAGCGCCAGG 
ATGCTCACGG CGAAGATGCT GCTCGGCCTC AACATCGGCC TCTTCGGCGT 
CATCGCGCTC GTCACGCTGC TGCTCTCCCG CGGCGAGCTC CGCGTCCACG 
TCCTCGGCTG GATCTGCGTC GCCGTCTCGC TCAGCGTCTT CGCCGCTCCC 
TTGAGCATCA TCAGGCTGGT GATCCGGACC AAGAGCGTGG AGTTCATGCC 
ATTCTCGCTA TCCTTCTTCC TGGTGCTTAG CGCGGTGATC TGGTTCTTGT 
ACGGGCTGCT CAAGAAGGAC GTGTTCGTGG CGCTGCCCAA CGTGCTGGGC 
TTCGTGTTCG GCGTGGCGCA GATGGCGCTG TACATGGCGT ACCGGAGCAA 
GAAGCCACTG GTGGCGTCGT CGTCGTCCGC CGTGGTGGCG GCCGGGCTGG 
AGATCAAGCT GCCGGAGCAT GTCAAGGAGG TGCAGGCCGT CGCCAAGGGC 
GCCGTCGCGG CAGCGCCGGA GGGCAGGATC AGCTGCGGCG CGGAGGTGCA 
CCCCATCGAC GACGTGATGC CCTCGGAGGT GGTGGAGGTG AAGGTGGATG 
ACGAGGAGAC GAACCGTACG GACGAGATGG CCGGTGACGG CGATCACGCT 
ATGGTCAGAA CGGAGCAGAT CATCAAGCCT GACATGGCCA TTGTTGTGGA 
AGTGTAGTCT GATTAAGCTT AGAGAACTAG TAGTAATTCT CTCATGTGAG 
GTATAGCCAG CTAGCTGGTG GTACACAAAC ATAAACACGA ACACATGTTC 
ATCGCGTACG TACTAGCTAC TAGGTGAGAC ACCTCTTGGC GTAGTACGTA 
CAGTAGTACT CCGGCCAGAT CTAGTAGGGA CTGTATTGGC GCGTGACTCG 
CCTGGTTCGT CCAGCTTGCA TGCAGAGACC GACCGAGCAA GCAAGCTAAT 
TAAGCTGGCC CGACCGACCG AGTGCATGCG TGTTTTGTGA ACCTAGCTAC 
TGAGGGGGGA GTGAAGGGTG TGGGTGTGCA ATCGACCGGC CTGTCGCGTC 
GATGCTCTTG CTTAGCTTCA TTCGATTCAT GCAGTTCAAT AATAAAATTT 
GGATTTTACT GC

Gene models with high sequence identity

AT3G48740.1 [+] show detail - Nodulin MtN3 family protein
E-value: 2e-72; Score: 270.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	RAG1-activating protein 1 homologue	1.4e-88
HMMPanther	RAG1-activating protein-1-related	1.4e-88
HMMPfam	MtN3/saliva-related transmembrane protein, conserved region	1.7e-29
HMMPfam	MtN3/saliva-related transmembrane protein, conserved region	4.8e-28

See the detailed result >

AT3G48740.1

Model type: Protein coding
Short Description: Nodulin MtN3 family protein
Computational Description: Nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: homolog of Medicago truncatula MTN3 (TAIR:AT5G23660.1); Has 1006 Blast hits to 953 proteins in 116 species: Archae - 0; Bacteria - 2; Metazoa - 236; Fungi - 0; Plants - 627; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink).
Link: InterPro Scan - TAIR