K35246

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35246

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35246

Determination of introduced cDNA(s)

  • J023087O18 - Rice Full-length cDNAs - Original: J023087O18

    full reading [+] show sequence

    Nucleotide sequence: J023087O18 - full reading 
    GTCATTTCTG ACACTATTGT ACACTCCATC TGTGTACGAC CATCAAATGC 
    AGTCTAGTTC TCGGTTTGTC AGTGGGTGGA TATGGGACAA GACCATTCCT 
    GATCCACGAT ATGTATCTTC GCTTGGTGTT CAGTGGGAGG ATGTATATAA 
    AACCGTCGAA AATCTGAATG ATGGTGAACG GAAGCTCAAA GTTGGACTAT 
    TAAATTTTAA CAGCACTGAA ATTGGCTCAT GGACACAATT GCTCCCGGAT 
    AGTGATTTTT CGATCATTAG GCTAGAGCAT GCCAAGGAAA GCATCACCTG 
    GCAGACTCTT TACCCTGAAT GGATTGATGA GGAGGAAGAA ACAGAGATAC 
    CATCGTGTCC ATCGCTTCCA GATCCTATTT TTCCAAGAGG GACACACTTT 
    GATGTTGTTG CTGTGAAACT TCCCTGTACC CGAGCTGGTG GATGGTCAAG 
    AGACGTTGCA CGTCTGCATT TGCAACTATC TGCTGCAAAA GTGGCAGTGA 
    CTGCTTCAAG AGGCAATCGT GGTATCCATG TGCTGTTTGT GACGGATTGC 
    TTCCCTATTC CAAATCTCTT CTCTTGCAAG AACCTTGTGA AACATGAAGG 
    CAATGCTTGG ATGTACAAGC CTGACTTGAA GGCACTAAGG GAGAAGCTCA 
    GACTTCCAGT TGGATCCTGT GAACTTGCTG TTCCACTCAA AGCAAAAGCA 
    CGACTTTACT CGGTAGACAG ACGGAGGGAA GCATATGCTA CTATTCTGCA 
    TTCAGCAAGT GAATATGTCT GTGGTGCAAT CACAGCTGCC CAAAGCATTC 
    GCCAAGCCGG ATCAACTAGG GATTTTGTTA TTCTTGTTGA CGAGACCATA 
    AGTAACCACC ACCGGAAGGG CTTGGAAGCT GCTGGGTGGA AGGTTAGAAT 
    AATCCAAAGG ATCCGGAATC CGAAAGCTGA GCGTGATGCA TATAATGAGT 
    GGAACTACAG CAAATTCCGT CTATGGCAGC TCACAGATTA CGACAAGATT 
    ATATTTATTG ATGCTGATCT CCTCATTCTG AGAAATGTCG ATTTTCTGTT 
    CGCAATGCCA GAAATCACTG CAACCGGCAA CAATGCGACA CTGTTCAACT 
    CTGGAGTAAT GGTTATTGAG CCTTCAAACT GCACATTCCA GTTGTTGATG 
    GACCACATCA ATGAGATAAC ATCCTACAAT GGTGGTGACC AAGGATACCT 
    GAATGAGATA TTCACATGGT GGCATCGAAT TCCGAAGCAC ATGAACTTCT 
    TAAAACATTT CTGGGAGGGG GATGAAGAGG AAGTGAAAGT GAAGAAGACT 
    CGGTTGTTTG GTGCTGACCC ACCAATCCTC TATGTCCTTC ACTATTTGGG 
    TCTCAAACCA TGGCTGTGCT TCCGGGATTA CGACTGTAAC TGGAATAACC 
    CGATACTGCG GGAGTTTGCC AGTGATGTTG CACATGCCCG TTGGTGGAAG 
    GTACATGACA AGATGCCAAA GAAACTTCAG CACTATTGTC TTTTGAGATC 
    AAGGCAAAAG GCTGGGTTGG AGTGGGATCG GAGGCAGGCT GAGAAAGCAA 
    ACTTCACCGA TGGACATTGG CGGAGGAACA TAACTGATCC TAGGCTGAAA 
    ACTTGCTTTG AGAAGTTCTG CTTCTGGGAG AGCATGTTAT GGCACTGGGG 
    TGAATCCAAG AACTCAACGA AGGAAAACCC TGTGCCGGCC ACACCTACCG 
    CGAGCCTCAC AAGTTCATGA GATGTGTAGA TAGCCCTATA CCAGATACAA 
    ACTTCTAAGC TCCATACATA CATAGCAACA GCTTGTAAAG GTAGCTATGC 
    TTAGGTTTCT CGACAAAACT ATACCTTGTG TTTGCTATCA TGGCTTCGGC 
    TCCACTCTGG CTGCTTTGAT AGCTCACAAT TTTTTTGGTT TTTTGGCCAA 
    TAATTCATCA GTATAGGTAA ATTTTCTGTT CATGAATTGT TTGGTCAGTC 
    TGGGGTTGGT TGTTGCTCGG CTGCAATAGC CTAGTTCGAT GTATGGTGGT 
    TGAACTGTTT CGGTGATAAA ATCTGGAGTG ACGCAACATG AGATTGCTGA 
    CCAGCAAACA CTGCCTCATT TTGACATG

    Gene models with high sequence identity

    1. AT3G18660.2 [+] show detail - plant glycogenin-like starch initiation protein 1
      E-value: 0; Score: 767.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Nucleotide-diphospho-sugar transferases 6.6e-60
    HMMPanther GLYCOGENIN 6.7e-152
    HMMPanther GLYCOGENIN 6.7e-152
    HMMPfam Glycosyl transferase, family 8 3.5e-37
    Gene3D no description 6.1e-68

    See the detailed result >

    AT3G18660.2

    Model type
    Protein coding
    Short Description
    plant glycogenin-like starch initiation protein 1
    Curator Summary
    Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch.
    Computational Description
    plant glycogenin-like starch initiation protein 1 (PGSIP1); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, starch metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 2 (TAIR:AT1G77130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR