K35250

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35250

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35250

Determination of introduced cDNA(s)

  • J013125N12 - Rice Full-length cDNAs - Original: J013125N12

    full reading [+] show sequence

    Nucleotide sequence: J013125N12 - full reading 
    GGTCATCCCG CTGCAATGGC CATTGGTGGG CATGCTGCCC GCGCTCCTCG 
    CCAACTGCAA CCACCTCCAC GAGTGGATCA CTTCCGTCCT CACAGTCACA 
    CCGTTGAACT TCCGGTTCAT CGGACCACCG AGCTCAGACA TGCGGCTCTT 
    TATCACCAGC GATCCGGCCA ACATCCGCCA CGTCTTCAAC ACCAACTTCT 
    CCAACTACCC GAAAGGGCGT GAGTTCCAGG AGATCTTCGA CATCCTCGGC 
    GACGGCATCT TCAGCGCCGA CGGCGAATCG TGGCGCCGGC AGCGCACCAA 
    GGCCCAGCTG CTCATGTCCA GCCCACGTTT CCGGGCGTTC GTGGCCCGGT 
    ACAGCCGTGA CAAGGTCGAG AAGGCGCTGC TCCCGCTGCT CGCCCACGTC 
    GCCGGGACAG GAGACGCGTG CAACCTGCAG GACGTGTTCC TGAGGCTGAC 
    GTTTGACACG ACGACCACGC TGGTGTTCGG CGTCGACCCC GGATCCGTCG 
    CGATCGACTT GCCGGAGGTG CCCTTCGCGC GCGCCATGGA CGACGCCATG 
    ACCATGCTTC TCCTCCGGCA CATCGTCCCG CTGTCGTGGT GGAGGTTAGC 
    GAGGAGGCTG GGGATCGGGT ACGAGCGGAA GATGCCGGTG GCGTGGCGAA 
    CCATGGACCG GTTCGTCGCC GACACGATCG CCAAGCGGCG GGCGGAGAAG 
    GCCAGAACCG GGATCGACGA CTCGGCGGAC CTGCTCTCCT CCTACATCAA 
    CGACGACGAA GAGGACGCCG GCACGGTGGA CGCCTTCCTC CGCGACACGA 
    CCATTAACCT CATGCTCGCC GGCCGCGACA CGACGGGCTC TGCGCTCTCC 
    TGGTTCTTCT ACCTCCTCAC CAAGAACCCG CGTGTGCTGC ACAAACTCCT 
    ACAAGAGCTC GACTCCGTCA AGAGCACCAC CGCCGCGGAC GGCATGGTGA 
    TCTTCGACCC GGACGAGACC GGACGGCTCG TGTACCTGCA CGCCGCCCTG 
    TGCGAGTCGC TCAGGCTGTA CCCGCCCGTG CCAATGGAGC ACAAGGGCCC 
    GGCCGCCGCC GATGTGCTGC CGAGCGGGCA CGAGGTGCGC CCGGGGGACA 
    AGATCGTGGT GTCGCTGTAC GCGATGGGGA GGATGGAGTC CGTGTGGGGC 
    AGCGACTGCA TGGAGTTCAG GCCGGAGCGG TGGATCTCCG ACGACGGCAA 
    GCTGCGGTAC GTGCCATCGT ACAAGTTCAT GTCCTTCAAC TCGGGGCCCC 
    GGACCTGCCT CGGCAAGGAC ATGGCGTTCG TGCAGCTCAA GACCGCGGCG 
    GCGGCGGTAA TGAAGAACTT CGAGATCGAG GCCGTTGCCG GCCACGTCGT 
    GGAGCCCAAG CTCTCCATCA TACTCCACAT GAAGAATGGC TTCATGGTGA 
    GGGTTAAGCG AAGGCTTGCG GTTTGCTAGA GAAATATCGG ATTCCATGGT 
    TCTAGGACAA GGACAAGAGG GAGGGGAATC AATCACGATT AAACAGTGCT 
    ATTGTACGTC CATTTGGTGC GAATATCGTC TATAGCGATT TGCTCTGCC

    Gene models with high sequence identity

    1. AT4G39490.1 [+] show detail - cytochrome P450, family 96, subfamily A, polypeptide 10
      E-value: 2e-124; Score: 442.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CYTOCHROME P450, SUBFAMILY 86A, B 3.1e-191
    HMMPanther Cytochrome P450 3.1e-191
    Gene3D Cytochrome P450 6e-92
    HMMPfam Cytochrome P450 1.4e-56
    FPrintScan Cytochrome P450, E-class, group I 1e-14
    FPrintScan Cytochrome P450, E-class, group I 1e-14
    FPrintScan Cytochrome P450, E-class, group I 1e-14
    FPrintScan Cytochrome P450, E-class, group I 1e-14
    FPrintScan Cytochrome P450, E-class, group I 1e-14
    FPrintScan Cytochrome P450, C-terminal 8.7e-12
    FPrintScan Cytochrome P450, C-terminal 8.7e-12
    FPrintScan Cytochrome P450, C-terminal 8.7e-12
    FPrintScan Cytochrome P450, C-terminal 8.7e-12
    PatternScan Cytochrome P450, conserved site 0
    superfamily Cytochrome P450 1.8e-95

    See the detailed result >

    AT4G39490.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 96, subfamily A, polypeptide 10
    Curator Summary
    member of CYP96A
    Computational Description
    "cytochrome P450, family 96, subfamily A, polypeptide 10" (CYP96A10); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 96, subfamily A, polypeptide 9 (TAIR:AT4G39480.1); Has 28273 Blast hits to 28182 proteins in 1460 species: Archae - 44; Bacteria - 2431; Metazoa - 10638; Fungi - 6078; Plants - 7933; Viruses - 3; Other Eukaryotes - 1146 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR