K35340

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35340

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35340

Determination of introduced cDNA(s)

  • J023112F13 - Rice Full-length cDNAs - Original: J023112F13

    full reading [+] show sequence

    Nucleotide sequence: J023112F13 - full reading 
    GCCCACACGA AGCGAAACGC AATTTCTCTC CAAACCAAAA CACCCGAGGC 
    GGAGAGGCCG AGGCGGCGAG GCGGCGGCGG CGACCGATCT GTGCGGGGAG 
    GGGGATCGCC GGAGATGTTC CTGGTTGACT GGTTCTACGG GGTGCTGGCC 
    TCGCTGGGGC TGTGGCAGAA GGAGGCCAAG ATCCTCTTCC TCGGCCTCGA 
    CAACGCCGGC AAGACCACCC TCCTCCACAT GCTCAAGGAC GAGCGGCTCG 
    TGCAGCACCA GCCGACGCAG TACCCGACGT CGGAGGAGCT GAGCATCGGC 
    AAGATCAAGT TCAAGGCCTT CGACCTCGGC GGCCACCAGA TCGCCCGCCG 
    CGTCTGGAAG GACTACTACG CCAAGGTCGA TGCTGTTGTT TACTTGGTGG 
    ATGCCGCTGA CAAGGAACGG TTTGCGGAGT CGAAGAAGGA ACTCGATGCC 
    CTCCTTGCAG ACGATTCCCT AGCAACCGTG CCTTTCCTGA TACTGGGAAA 
    CAAGATCGAC ATCCCATACG CCGCGTCGGA GGAGGAACTC CGCTACTACC 
    TTGGTCTGAG CAACTTCACC ACCGGTAAGG GCAACGTGAA CCTAGCCGAC 
    TCCAACGTGC GGCCTCTGGA GATCTTCATG TGCAGCGTCG TCCGCAAGAT 
    GGGCTACGGC GAAGGCTTCA AATGGATGTC CCAGTACATC AAATGAGAGG 
    GGCTTCTGCT CCTCAATTGT CAATAGCAGC TGCTGCTCCT GCTGTCCACA 
    GTGGGAGTGG GTAATTCAGG CCTCTGGTTC TGTTTATCAA CTCTCCTGAT 
    GCTTTGGAGA AACCTACTGC ACCTGTAAGG AAAAAAGTTT GTCGTAGTGG 
    TGGATAGTGA ATGCCTGTAA GTTGGTGTTA ATACTAGAAA TATGACGGGG 
    TTTATTTGTT TGATTGTTTA TGGGTGGTGT GACCTTATTA GCTAGAAAAT 
    GTGGGTTGCT GGAATCGTTT CTTGACAACA GGAAATGTTT CAGCCAATGT 
    ATTCACGCTA TCTATCTAGC CAGTGATATG TGTATGAGCA ACTTCGGTC

    Gene models with high sequence identity

    1. AT4G02080.1 [+] show detail - secretion-associated RAS super family 2
      E-value: 3e-84; Score: 308.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Small GTPase SAR1-type 30.221
    HMMPanther Small GTPase SAR1-type 1.3e-127
    HMMPanther ARF/SAR superfamily 1.3e-127
    Gene3D no description 8.6e-57
    FPrintScan ARF/SAR superfamily 3.4e-74
    FPrintScan ARF/SAR superfamily 3.4e-74
    FPrintScan ARF/SAR superfamily 3.4e-74
    FPrintScan ARF/SAR superfamily 3.4e-74
    FPrintScan ARF/SAR superfamily 3.4e-74
    HMMSmart ADP-ribosylation factor 4.7e-19
    HMMSmart Small GTPase SAR1-type 4e-130
    HMMTigr Small GTP-binding protein 1.4e-10
    superfamily P-loop containing nucleoside triphosphate hyd 2.5e-41
    HMMPfam ARF/SAR superfamily 2.4e-65

    See the detailed result >

    AT4G02080.1

    Model type
    Protein coding
    Short Description
    secretion-associated RAS super family 2
    Curator Summary
    A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.
    Computational Description
    secretion-associated RAS super family 2 (SAR2); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT3G62560.1); Has 6784 Blast hits to 6782 proteins in 374 species: Archae - 2; Bacteria - 40; Metazoa - 3245; Fungi - 1245; Plants - 1081; Viruses - 0; Other Eukaryotes - 1171 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR