K35342

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35342

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35342

Determination of introduced cDNA(s)

  • J033126L16 - Rice Full-length cDNAs - Original: J033126L16

    full reading [+] show sequence

    Nucleotide sequence: J033126L16 - full reading 
    GACTACCAAA GAACAACACA CAACTCGGTC TCTAGTTGAA AAGCTATAGC 
    CATGGCGGAG GAGAAGGAGC TGGTGCTGCT CGATTTCTGG GTGAGCCCGT 
    TCGGGCAGCG GTGCCGGATC GCCATGGCGG AGAAGGGGCT GGAGTTCGAG 
    TACCGCGAGG AGGACCTCGG CAACAAGAGC GACCTCCTCC TCCGCTCCAA 
    CCCCGTCCAC AGGAAGATCC CCGTCCTCCT CCACGCCGGC CGCCCCGTCT 
    CCGAGTCCCT CGTCATCCTC CAGTACCTCG ACGACGCGTT CCCCGGCACC 
    CCCCACCTCC TCCCTCCGGC GAACTCCGGC GACGCCGACG CCGCGTACGC 
    GCGCGCCACG GCGAGGTTCT GGGCGGACTA CGTCGACAGG AAGCTCTACG 
    ACTGCGGGTC CAGGCTGTGG AGGCTCAAGG GTGAGCCGCA GGCGGCGGCG 
    GGGCGCGAGA TGGCGGAGAT CCTCCGCACG CTGGAGGCGG AGCTCGGCGA 
    CCGGGAGTTC TTCGGCGGCG GCGGCGGCGG CAGGCTCGGG TTCGTCGACG 
    TCGCGCTCGT GCCGTTCACG GCGTGGTTCT ACAGCTACGA GAGGTGCGGC 
    GGGTTCAGCG TGGAGGAGGT GGCGCCGAGG CTGGCGGCGT GGGCGCGGCG 
    GTGCGGCCGG ATCGACTCCG TCGTCAAGCA CCTCCCCTCG CCGGAGAAGG 
    TCTACGACTT CGTCGGCGTC CTCAAGAAGA AGTACGGCGT CGAGTAGATC 
    GGTGGATGCG AAGTTGCAGG GATCGATTGG CGGTTGCGTT CGCTACGTGA 
    ACGATTCGTC CGTTGTTTCA GTGGCCAAGT GTGTGTGAGT TTGTTGTTAC 
    CGTTGAGTGC TTGTGTGTGG GATGGTTGGT GGCAGCAGAG AGTTGCCTCC 
    GATTCTCTGA GATTGTCACT AAATAAAGTT TGTCCTTTGA AACT

    Gene models with high sequence identity

    1. AT1G78380.1 [+] show detail - glutathione S-transferase TAU 19
      E-value: 9e-48; Score: 187.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glutathione S-transferase, C-terminal-like 2.1e-41
    superfamily Thioredoxin-like fold 3.9e-23
    Coil coiled-coil 0
    HMMPanther GLUTATHIONE S-TRANSFERASE 2.1e-98
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 2.1e-98
    Gene3D Thioredoxin fold 1.3e-29
    Gene3D Glutathione S-transferase, C-terminal-like 8.2e-52
    ProfileScan Glutathione S-transferase, N-terminal 23.576
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 17.747
    HMMPfam Glutathione S-transferase, N-terminal 1.2e-12
    HMMPfam Glutathione S-transferase, C-terminal 2.3e-07

    See the detailed result >

    AT1G78380.1

    Model type
    Protein coding
    Short Description
    glutathione S-transferase TAU 19
    Curator Summary
    Encodes a glutathione transferase that is a member of Tau GST gene family. Expression is induced by drought stress, oxidative stress, and high doses of auxin and cytokinin. naming convention according to Wagner et al. (2002) The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.
    Computational Description
    glutathione S-transferase TAU 19 (GSTU19); FUNCTIONS IN: glutathione transferase activity, glutathione binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to cyclopentenone, toxin catabolic process, cellular response to water deprivation; LOCATED IN: chloroplast, plasma membrane, chloroplast stroma, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 25 (TAIR:AT1G17180.1); Has 6888 Blast hits to 6873 proteins in 1203 species: Archae - 0; Bacteria - 3293; Metazoa - 563; Fungi - 167; Plants - 2052; Viruses - 0; Other Eukaryotes - 813 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR