K35347

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35347

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35347

Determination of introduced cDNA(s)

  • J023062E06 - Rice Full-length cDNAs - Original: J023062E06

    full reading [+] show sequence

    Nucleotide sequence: J023062E06 - full reading 
    GGAACCCTAC GAAACTACCG AAGCGAAGCG AAGCGAAGAA TCGGCGGCGG 
    CGGCGGCGGC GGCGGTGGGG AGAAGCCATG GAGCGGCTGC AGCGGATCTT 
    CGGCGCCTCC GGCATGGGGC AGCCGCCGTC GGACTCGCCG CTGCTCGACT 
    CCTCCGAGCA GGTCTACATC TCCTCCCTCG CCCTCCTCAA GATGCTCAAG 
    CACGGGAGGG CCGGCGTGCC GATGGAGGTG ATGGGGCTGA TGCTGGGGGA 
    GTTCGTCGAC GACTACACGG TCAGGGTGGT CGACGTCTTC GCCATGCCGC 
    AGAGCGGGAC CGGGGTCAGC GTCGAGGCCG TCGACCATGT CTTCCAGACC 
    AACATGCTCG ACATGCTCAA GCAGACCGGG AGGCCAGAAA TGGTGGTAGG 
    TTGGTACCAT TCCCATCCTG GATTTGGTTG CTGGCTTTCA GGAGTTGACA 
    TCAATACTCA ACAGAGTTTT GAAGCTTTAA ACCCCAGGGC AGTTGCCGTC 
    GTGATAGATC CCATCCAAAG TGTCAAGGGG AAAGTTGTCA TTGATGCATT 
    TCGCCTTATT AACCCTCAGA CCATGATGCT TGGTCAGGAG CCACGACAGA 
    CAACATCAAA TGTTGGGCAC CTAAATAAGC CATCTATTCA GGCTCTTATT 
    CATGGGCTGA ACAGGCACTA CTATTCAATT GCAATCAATT ACCGGAAAAA 
    TGAGCTTGAG GAAAAGATGT TACTGAACTT GCACAAAAAG AAATGGACCG 
    ATGGATTGAT TCTGAAGAGG TTTGACACTC ATTCAAAGAC CAATGAGCAG 
    ACTGTTCAGG AAATGCTGAA CCTTGCTATC AAGTACAACA AGGCGGTGCA 
    AGAGGAGGAT GAGCTGCCGC CTGAGAAATT AGCGATAGCA AATGTGGGAC 
    GGCAAGATGC TAAGAAGCAC TTGGAAGAGC ATGTCTCCAA TTTGATGTCA 
    TCAAACATAG TTCAGACGCT AGGAACCATG CTCGATACAG TTGTATTTTA 
    GATCACTACT GCTGTTATCC CAACACTGTA CCCAGAGCTC GTTTATTTTT 
    TATTTTTTTA TGTTTATCGA AGCCTACCAT AATTCAGTGA ACTTAACGCC 
    AGTTACATTT GGGTT

    Gene models with high sequence identity

    1. AT5G23540.1 [+] show detail - Mov34/MPN/PAD-1 family protein
      E-value: 2e-147; Score: 519.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 26S PROTEASOME REGULATORY ATPASE SUBUNIT 5.3e-214
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -R 5.3e-214
    HMMPfam Mov34/MPN/PAD-1 1.3e-34
    HMMSmart Mov34/MPN/PAD-1 4e-49
    superfamily JAB1/MPN domain 5.2e-23

    See the detailed result >

    AT5G23540.1

    Model type
    Protein coding
    Short Description
    Mov34/MPN/PAD-1 family protein
    Computational Description
    Mov34/MPN/PAD-1 family protein; INVOLVED IN: response to salt stress, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9-signalosome 5B (TAIR:AT1G71230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR