K35423

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35423

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35423

Determination of introduced cDNA(s)

  • J033125O08 - Rice Full-length cDNAs - Original: J033125O08

    full reading [+] show sequence

    Nucleotide sequence: J033125O08 - full reading 
    GGAAGCAGCA CAAGCCCAAG TAGGGTTTCC TCGCTCCCAC CTTCACCCAC 
    GAGGTCTCCG ACGCCGCCGC GGCCGCCGAC GACGACGACT ACCTCCGGCG 
    ACCGCCGGGG CGGCCTTAGC GCCGGGTACC CTGCCGCCTC CGCGTAGCCG 
    AGCCCTATCG CGTACCCGTC CCTCTCGCGC CTAGTGCGCC GGGCTGGCCG 
    GTGGCGGAGT ACCGGAAATG GTGATCTCTT CTCCCTCTCA GAGATTCCAG 
    CTTTGGTTAG TGGCTCGTGT GTCGTTTGCA TGTGCTAAGA TTGGATTGAG 
    TTTTTGTTTG AGCAATCCCA TCCGTAGGGT AAGGGAACCA GGTGCAGCTA 
    TAGAGGGAAT TTTCCAGGTG TTGCACTGAT TGCTAATGTG AAATGTTGAG 
    CAATTTTGGA GTCAGGGGTG TGTGTGGTAG ATGTAAGATT GGGAACTTTG 
    TTGGTAAATC TGTTATTATT CCGATTGAAA GTTAAAGCTC AGATTACTCT 
    GCTCTGTGGA TTTGTTGAGC CAGTTGCTTA TCTGGGACTT CGGTAATCCA 
    ATTAGAGTAG AACTTGGTGG GCATAGTCAA TCTGCACGAA TTGTTACTAA 
    TGATCATGGA AACATCTTAG TATAACTTAC ATCATTTCTC ATCCTCCTAT 
    TACTATTGGT ATGAAATTAC ATTTTGGGTG CATTCACTGC ATGGTTTTAA 
    GTATTAATCA GCGGGTTGTC CGAAACTAAG AATGAGTGTA AATTGGCATT 
    GGTTTGATTT ATGTTTGCAA TGCAGCGGCA GTTTTCTAAT GACCGTGTTG 
    TTTTCGGTTA TTTTTGTAGT TCGCAAAACA ATTTCCTATT GTCTTCTCCA 
    TGCATCCTAC CAGTTTGTGC TTATTTACTT TCTAGCTTCT GGATAATTTT 
    ATGATCTCTA AATGTTTGAT TTCAGTTTAA TGCATGAATA CAGAGTGCCA 
    ATAACAAAGT AGAGGCCAAA AATGGATGCG CAACACGACA AAGTTAGTTA 
    TAAAGTTATA GCGATTTAAT ACTTCCATAT TTAATTTCTG CAGGCTACAC 
    CACTCATAGC AGGACTCACG GTTGCAGCGG CGGCCCTTGC TGGTAGATAT 
    AGTATCCAAG CTTGGAATGC TTATAAGGCA AGGCCTGTAG TTCCTAGGAT 
    GCGCAAATTC TATGAAGGTG GCTTTCAACC TACAATGACT CGAAGAGAAG 
    CTGGTTTAAT CCTAGGTGTC AGGGAAAACG CCCATCCTGA GAAGGTAAAA 
    GAGGCGCATA AGAAGGTCAT GGTTGCTAAC CATCCAGATG CAGGCGGTAG 
    CCATTACCTT GCTTCAAAGA TCAATGAGGC CAAAGATATT TTGTTAGGGA 
    AGACAAAAGG AGGGGGGTCA GCCTTTTGAT TATTACAATA ATAATGCACC 
    ATATGTTCTT TCAATGAAAT GGTGAATTTT GGTATCTGTA GTCTGAGGAC 
    TTGAAAGGTA GGCTTAAATC TTGATGCGTG ACTAGAAATT TATGGACAGA 
    AAATGTTAGC AGGTCTGTCC ACTGTTTGAC ATTTCAGTGC CCGGTCGTGT 
    TCGCTCAACT GGTTATCGAA TAACTGATAT ACATGGAAAT GGTAATACCT 
    GTACGATGTA TCATATCTCT

    Gene models with high sequence identity

    1. AT2G35795.1 [+] show detail - Chaperone DnaJ-domain superfamily protein
      E-value: 1e-39; Score: 161.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR12763:SF4 1e-77
    HMMPanther PTHR12763 1e-77
    HMMSmart Heat shock protein DnaJ, N-terminal 0.000119999985703101
    ProfileScan Heat shock protein DnaJ, N-terminal 0
    HMMPfam Heat shock protein DnaJ, N-terminal 0.00049
    superfamily Heat shock protein DnaJ, N-terminal 2.00000075217465e-16

    See the detailed result >

    AT2G35795.1

    Model type
    Protein coding
    Short Description
    Chaperone DnaJ-domain superfamily protein
    Computational Description
    Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT3G09700.1); Has 912 Blast hits to 912 proteins in 301 species: Archae - 0; Bacteria - 183; Metazoa - 207; Fungi - 194; Plants - 95; Viruses - 5; Other Eukaryotes - 228 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR