K35603

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35603

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35603

Determination of introduced cDNA(s)

  • J033105A13 - Rice Full-length cDNAs - Original: J033105A13

    full reading [+] show sequence

    Nucleotide sequence: J033105A13 - full reading 
    ACCTTTGCTC TGTTTCCTCT GCCTGCGCCA TGGCAGCACC AGGAAGCAGC 
    CTCGCGCCGA CGGCCTCAAG GCCTACCCGA TCGTCGGCAT ACTGCCACAC 
    TTCGTCAGGA ACCAGCACCG CCTCCTCGAG TGGTCGGCCG GCGTCGTGGC 
    GCGCTGCCCC ACGCACACCA TGTCCTTCAA CTTCAAGGGC TTCGGCCTCA 
    TCGCCGGCGC CATCACCGGC AACCCGGCCA ACGTCGAACA CATCGTCAAG 
    ACCAACTTCC AGAACTACTC CAAGGGGGAG TACGTGGTGT CAGTCATGGA 
    GGACTTCCTC GGCCACGGCA TCTTCAACTC CGACGGCGAC CAGTGGCTGT 
    GGCAGCGGAA GGCCGCCAGC TACGAGTTCA ACAAGCGCTC GCTGAGGAAC 
    TTCGTGGTCG ACACCGTCAG GTCCGAGGTC GTCGATAGGC TGCTGCCGCT 
    GCTCACGCGG GCGGAGCGCG ACGGCCGGAC GCTGGACGAG CAGGACGTGC 
    TCGAGCGCTT CGCGTTCGAC AACGTCTGCT GCGTCGCCTT CGACGAGGAC 
    CCGGCGTGCC TCACCGAGGA GGGGATGGGG ACGAACGCGC GGACCGAGTT 
    CCTGCGCGCC TTCAACGACG CGCAGAACAT CCTCATGGCG CGGTTCATGT 
    CGCCGGTCGA GTGGGCATGG CGCGCCAAGA GGCTGCTCGA CTTGGAGCCG 
    GAGAGGCGGA TGCGGGAGGC GCTCGCCACG ATCCATGGCT ACGCCGACAG 
    GATCGTCCGC GAGCGGAGGG AGAGGGGCGC GGCGGGGCTG GCGCGCAAGG 
    ACGACTTCCT GTCGCGCTTC GCCGCGACCG GCAAGCACAG CGACGAGAGC 
    CTCCGCGACG TGGCACCAAC TTCGTCCTCG CCGGGCGCGA CACGACGTCG 
    TCGGCGCTGA CCTGGTTCTT CTGGCTGGTG TCCGGCCAGC CGGACGTGGA 
    GGACAGGATC GCGCGCGAGA TCCGCGCGGT GCGCGCGTCG AGCGGGAGCA 
    CGGACGCGGC GGCGTTCAGC TTTGACGAGC TGCGCGAGAT GCACTACCTG 
    CACGCGGCCA TCACGGAGGC GATGCGGCTG TACCCGCCCG TGGCCATGGA 
    CTCGCACTGC TGCCAGAACG ACGACGTCTT GCCGGACGGC ACGTTCGTCG 
    GCAAAGGATG GCAGGTCACC TACAGCGCGT ACGCCATGGC GCGCTTGGAG 
    GAGTTATGGG GCGCGGACTG CGAGGAGTTC AGGCCGGAGC GGTGGCTCGA 
    CGAGGACGGC GTGTTCCGGC CGGAGAGCCC GTTCAAGTAC CCGGTGTTCC 
    ACGGCGGGCC GAGGATGTGC CTCGGCAAGG AGATGGCATA CATACAGATG 
    AAGTCCATCG CGGCGTGCGT GTTCGAGAGG TTCAGCTTCA GGTTCGTCGG 
    CGGCGAGGGA CGGCCAGGGC TTGTGTTCTC GGTGACCTTG AGGATGGAAG 
    GCGGCTTGCC GATGCGAGTG AAGAAGAGGA GGGATTCAGT TTGTTAGAAT 
    GTAAATGTTC TCTTTGCTAC TTGTTGCCTT TCATTTATTC CAGGTTGAGT 
    TCTGGATATT ATCC

    Gene models with high sequence identity

    1. AT3G56630.1 [+] show detail - cytochrome P450, family 94, subfamily D, polypeptide 2
      E-value: 2e-135; Score: 237.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Cytochrome P450, C-terminal 5.6e-11
    FPrintScan Cytochrome P450, C-terminal 5.6e-11
    FPrintScan Cytochrome P450, C-terminal 5.6e-11
    FPrintScan Cytochrome P450, C-terminal 5.6e-11
    FPrintScan Cytochrome P450, E-class, group I 7.1e-08
    FPrintScan Cytochrome P450, E-class, group I 7.1e-08
    FPrintScan Cytochrome P450, E-class, group I 7.1e-08
    FPrintScan Cytochrome P450, E-class, group I 7.1e-08
    FPrintScan Cytochrome P450, E-class, group I 7.1e-08
    PatternScan Cytochrome P450, conserved site 0
    HMMPanther CYTOCHROME P450, SUBFAMILY 86A, B 3.5e-78
    HMMPanther Cytochrome P450 3.5e-78
    HMMPanther CYTOCHROME P450, SUBFAMILY 86A, B 2.9e-99
    HMMPanther Cytochrome P450 2.9e-99
    Gene3D Cytochrome P450 6.4e-54
    Gene3D Cytochrome P450 4.9e-26
    HMMPfam Cytochrome P450 2e-43
    HMMPfam Cytochrome P450 1.8e-13
    superfamily Cytochrome P450 1.5e-61
    superfamily Cytochrome P450 1.6e-30

    See the detailed result >

    AT3G56630.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 94, subfamily D, polypeptide 2
    Curator Summary
    member of CYP94D
    Computational Description
    "cytochrome P450, family 94, subfamily D, polypeptide 2" (CYP94D2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 94, subfamily D, polypeptide 1 (TAIR:AT1G34540.1); Has 28588 Blast hits to 28499 proteins in 1478 species: Archae - 44; Bacteria - 2617; Metazoa - 10641; Fungi - 6172; Plants - 8084; Viruses - 3; Other Eukaryotes - 1027 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR