K35705

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35705

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35705

Determination of introduced cDNA(s)

  • J023004L23 - Rice Full-length cDNAs - Original: J023004L23

    full reading [+] show sequence

    Nucleotide sequence: J023004L23 - full reading 
    GGCGCCTCGA TCCTCGCCTC CTCCCCGCAT TCACTCCCCC GAAACCCTCG 
    CTCTCTCCCC CATCCGCCGC CGCGGCCGCA AACGACGGCG GCGGCGAGGT 
    TCGTCGGCGG GGATTGTGGG GGGGGGGGAG AAGACGACGA GGGTTTTTTT 
    TTTATTTTTT TTTTCTGATT ATCCCTCGCG CGGGGGGTTT TGGGCGATGG 
    GGAGGAGGAG CAAGCAGAAG GTGGAGGATA TGGCCGAGGA GCTCTGCTTC 
    GTCTGCAAGG ACGGCGGCGA CATCCGCGTT TGCGACTTCA AGAACTGCCT 
    CAAGGGTTAT CATCCACACT GTGTGGGGAA GGAGGAAAGC TTCCTTGATT 
    CTGCCGAACA GTTCATTTGT GAATTGCACA AATGTGTTAG CTGCAAAAGG 
    AATTCAGAAT ATCATTGTTT GTGTTGTCCA AGTTCCTCTG TATGCGGTGA 
    ATGCCTTGGA AAAGTTGAAT TTGCACAATT TAGGAAGCAG AGCCAGACCA 
    AAGGATTATG CAATAACTGT TTAAAGTTGG CATTGTTTGT TGAGAAGAAC 
    TCTGAAGCTA ATTCTGATGG GGAAACAGTT GAATTCAGAT ATACGGAGAA 
    CTATCTTGTT CTGTTTAAAG ACTACTGGGA AACTATTAAA GACAATGAAG 
    GCTTGGCATT GATTGATTTG CAGCAAGCCA ATATTTGTCT TAGAACAAGC 
    TTAAGCTGTA AACAAGGAAG GGATTCAGAG AAACCCCCAG ATGAAGATTA 
    CAGGGCAGAT AAGAATTCAT TGAGTGTTAA TGATGGCGCT GAACAACCAT 
    TCCCGGTTGA TGTAAAGGTC CAACCAAGTG AAGCAAAAAT GTCACTGAAG 
    AGAAAGAAGT CAAACAAGAA AACATATGTC GGTTGGGGTT CAAAAGAGCT 
    AATTGAATTC CTGTCATGTA TTGGCAAGGA TACAACTAAA CCTCTTGATG 
    AATTTATACT TACTGGAGTT GTTAAGGAGT ACATCCAGCA GAAGAATCTA 
    TTCAAGGACA GGAAAAGAAA ATCTGTCATT TGTGATGATA AGCTTCATTC 
    TTTGTTCAGG AAAAGAAAAG TGAAGTCAAA TATGATTCTT AACTTGCTGG 
    AAATACATCT TGCGGCAAAT GCTGCTTCAG AGGATGATTT TCTCGATGAT 
    TCTGAGGATG ATGAAGGCCG AATTATGAGA AAAAGGCCTT GTAATACTTT 
    AAAGGCGGCA GAGACTTCTG AGAGGGATCC AAAGAGAAAC AAGAAATGCT 
    TTGCAGCTCT TAATCACAAT AACTTAAAGT TAATTTATTT GAGAAGAACT 
    CTAATTATGA ATCTTATGGG CCAAGACACA TTTGAACAGA AAGTTGTTGG 
    AAGTTTGGTT AGAGTCAAGA ATGATGACAA TCATTATAGT TATCAGATGC 
    CTAAAAAACA CTACCAGCTT GGCCTAGTAA CAGGCATTAG GAAATCTCCA 
    CAAGAATACA AGATAAAGGA CAAACGTACA GATATTCTTT TATGTGTTTC 
    CAATCTGTGG GATGACATCA AGATCTCCAT GTTGTCTGAA GAGGACATAG 
    AGGAGGACGA GTGTAATGAT CTCCTTCTGT TGGCTAAAAA AGGACTCTTC 
    AAAAGACCTA CTGTTGCTGA TTTAGAAGAG AAAGCTGCAA GTATACATGT 
    GGACATCGTG AATCATTGGA TTGATAGAGA ACTTATGAGA CTGGAAAAGG 
    AGATCGAAAG AGCACATGAG AAGGGTTGGC GCCAAGAATT GCATGAACTA 
    TTTAATAAAA AAAGACTTCT AAGCACACAA GACGAAAGAC AACGTCGTCT 
    TGCAGAGGTC CCAGAAGCTA TTCCAGATAC AGAAGAGAGT AAAAGGGATG 
    AATTTGGAGT TGCTGCAAGC AACCATCTTG AAGAAAACAA AGGTGCAACA 
    GGGCATGTAC CTAATTCTGT GAAAGTTCTA ATGGAGGATT CACGAGGTGC 
    AACAGGGCAT ATAGCTGATT CTGTGAAAGT ACTTATGGAG GGTTTACCAG 
    GAGGTGCAAC AGCACGAGTA GCTGATGTTT TCAATGTTGA TATGGCTAAA 
    TCACAAGATG CATCAGGGCA AGTAACTGAT TACTTGGAGG TTGTTGAAGA 
    GGAAACTCCA GAAGATGCAT CAGGACAAGT AGCTGATATC TTGGACGTTG 
    TTGAAGAGGA ACCTCCAGAA GATGCATCAG GACAAGTAGC TGATATCTTG 
    GAGCTTGTTG AAGAGGAAAC TTCAGAAGAT GCATCAGGAC AAGTAGCTAG 
    TATCTTGGAG GTTGTTGAAG AGGAAACTCC AGAAGCACCT GGTAAAGACC 
    TTTGTAATGG TGGCATTCCT GGGTCTGGAC TACAAAACAA AATGCACAAT 
    GCTCAAGATG GTGGCACGGC TCAAGGCAGC GATATGTGCA ATGGCGGAAA 
    TACCTCAAGG CGTCTCAATG ATCGCAAGAG TGTTATCGTT ATCGACTCAG 
    ACAGCGATGA AGACGAGGAT CCTCACCCAG AGCAACATGA ACCAGAACGT 
    GCTGCTCCTC GGGCAGCCAT GGACGTGGTC ATGGCTCCCA CTCATGGTGC 
    TCCGGTAGCC ATGAATGGGA CTAGTGCTCC CACTCTTCCT TGTGCTAAGA 
    GAGGCAAGAA CGGGACTACC GCGCCTAAAG GCCGTGTTCC TATCGCTGCA 
    CTTCACGCAC TGCAATCCAT GAATGCGCCA GGTGAGCATG AATACATATG 
    GAATTACGCG GATCCTCAGG GGAAAGTGCA AGGGCCATTC ACAATGGAGC 
    ATATGCGGAA CTGGCACCGG AATCGTTTCT TCCCTCCGGA CTTCAGGGTG 
    TGGAGATTAG GCCAGACACA GAATGATTCC GTCCTGCTAA CAGAGGCCAT 
    GGGCCTGAAA TTTTCTTCTT GACCTAAATA GGCTTTTTTT TTTTCGTTCC 
    TTGCGTTATT CAACAGTGTA GCTGAACCTT AAGCAGGCAT CGCTGAAGCT 
    TGAGTTGATG TAAATGTTTA GTTTTGGTCA TAGGCGGTTC AGTGGAGATC 
    TTTTTTTTTT CTTTAGTGAT GTTTTAGCAG ATTGCAATGT CTAGCAAAAT 
    TTGCTAAACA AGGCAAACAG AAATGGACAG TCGGTTTAGT GATGTTTAGC 
    ATATTCCAAT GTCAGACGCT CAGAGCCCCA TCAAACAAAC AGCAATGGAT 
    ATACTCCAGT ACATAAGTTT TC

    Gene models with high sequence identity

    1. AT5G63700.1 [+] show detail - zinc ion binding;DNA binding
      E-value: 3e-85; Score: 313.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther gb def: ENSANGP00000013325 (Fragment) 2.1e-09
    HMMPanther GRB10 INTERACTING GYF PROTEIN 2.1e-09
    Coil coiled-coil 0
    Gene3D SWIB/MDM2 domain 3.3e-37
    superfamily SWIB/MDM2 domain 7.4e-22
    superfamily GYF 2.2e-12
    superfamily Zinc finger, FYVE/PHD-type 1.1e-06
    HMMSmart Zinc finger, PHD-type 3.2e-05
    HMMSmart Plus-3 domain, subgroup 9e-22
    HMMSmart GYF 7e-10
    HMMPfam Plus-3 3e-20
    HMMPfam GYF 5.3e-16
    HMMPfam SWIB/MDM2 domain 1.1e-08
    ProfileScan GYF 14.26
    ProfileScan Plus-3 24.992

    See the detailed result >

    AT5G63700.1

    Model type
    Protein coding
    Short Description
    zinc ion binding;DNA binding
    Computational Description
    zinc ion binding;DNA binding; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Zinc finger, PHD-type (InterPro:IPR001965), Plus-3 (InterPro:IPR004343), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G08430.1); Has 1143 Blast hits to 955 proteins in 114 species: Archae - 0; Bacteria - 2; Metazoa - 778; Fungi - 27; Plants - 204; Viruses - 3; Other Eukaryotes - 129 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR