K35902

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35902

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Original: K35902

Determination of introduced cDNA(s)

  • J013006B16 - Rice Full-length cDNAs - Original: J013006B16

    full reading [+] show sequence

    Nucleotide sequence: J013006B16 - full reading 
    GATTGTTCCA CTCCACGGTT CAACTAACCA CCAAATTACC AGACTACCCC 
    TCGGAGCTCG AGGCCAAGGG CCGCCATGGA TCGCCGGGAC ATGGCGAGCC 
    ACCGCGGCCG GAGTTCCACT CGTGGCCACG GATGGGGCCG AGGCTGGCGA 
    GGTCGGGGAG AAGGCCGCGG CCTTGGTCTC AGCCGCGGCG CCGGCCCCTC 
    ACCGCCACCT CCTCCTTCCT CCTCCACCTC TTCCTTCCCG GCGGCGGCCA 
    GCGCCACCGC GGCTGGTACC GGCGGCGACG CCCCGCCGAT CGTGGGCAGC 
    TGCCCCGACA TGTGCCCAGC GAGGGAGAGG GCGCAGAGGG AGCGGCTGAG 
    GGACCTGGCG GTGTTCGAGC GGGTGGGCGG CGACCCCGCG CGCACGTCCC 
    CTTCCCTCGC CGTGAAGAAG GTGAGCCATC CATTTTTCTC CGTACTCATG 
    TGGAGGCCAT TCCTGATTTT TTTTTTCTTT TTGAACTTGC GGTTGGGTCG 
    TGGTGATGCT TCACTGCTGG TCATTTTTGG TGCGTATCTG CTTGGATTGT 
    TCTCTCCATG CAAATGGACA GGCTATAGCT TGGTTCCATT CCATGTGGTG 
    GTTTAGTCTG TTTTGATTGG ATTTGATATG GAGCTGGAAG CTTTTTTTTG 
    TGCATGCAAC TGTGCATGTA TTTTTGCTTA AAAGGGTGAT CAGTTGCCGT 
    TAAGCATGTG TTGGAACAAT CAACACTTTA TGTTAGATGT AGCTATATAG 
    TTACATATGC CACCAATAAT GCAATAACAG CAATGCAGCA CTAAATCTGA 
    TCTACGCTTG TCTTGTCCAA TCACTGCCAG AGTGTAAGGA AGCTATTCGG 
    GTAGCCTAGC CTTCAAGAGA TTGAATGTAC GATAGTGTCA GATTTATATT 
    TATTTTGTTT GATTTCTTTT TATAGTTTAT TGGATGAAAT ATAACCCTAC 
    TTAGTACTTA CCTTGTACTA GTATTTTTGC AGGGGTGAAG ATATGATGAA 
    AGGACAGGAT TATCAATTCA TTTAATACTT ATTTTTATCT TGAATATGTG 
    GTCATGTTTG CAGATAAAAG AAAGCAATGT GCAAAAGCAG ATTATGATTT 
    TTTTTACATT ATTTATTTAG CATGCCATTG TTATTAGGTA AAAAGAGCTT 
    GTATCAACGA AAATAATAGT TATACAATGA GATATCATGT TCTGCACACT 
    TGAGGTGAAA CTGTCGGAAT TCATTTACTT GCCACTGCAA ACTTGAGTAA 
    AAATGCCACT GAAAAATCAT AAAAGGTGTG TAAGATAATG AATCTTTACC 
    AACCACATAG AATAGCCAAT TTGCCACCTG AAAACACTGT TATAATTACA 
    AATTTGCACT ACAGTTTCAT GTGGTCTGAA AGATTTCATG AACCGCGTGT 
    GTTTTAAGAG AATCAGGTAG CTATTTGAGA ATTCTGTGTA TCTCCGTTCC 
    TTTTCTAACA CTTGGTTTCC TGCTAGTTTT GCAGAACTAT CTCTTCCACG 
    AGTGTACAGG CATCAGATAT ACGCCCTCTC CCAGTCCTGC GAGAAACAAT 
    GGATTATCTT TTGCATTTAT TGGATTCCTC AGAGCATCAG TTTGAGATAG 
    TTCATGATTT TATATTTGAT AGGACAAGGT CTGTGAGGCA AGACCTCAGT 
    ATTCAGAACA TAGTGAATGC CCAAGCAATT CAAATATACG AGGATGTGAT 
    AAAGTTTCAT ATTCTATCCC ATCAGAAGCT TTCTAGGTCT TCCCAGGATT 
    CTGATGCTTC TTCCCTGTGT TACCTAAACA TGGAGCAGCT AATGAAGTGC 
    CTTCTTTCTC TGTTTGATAT GTATGATGTA ATTCACAAGA ACAATTCACA 
    GAGTAGTAAA GAGACTGAAT ATTATTCCTT CTACGTGCTT CTACATTTGG 
    GCTGCAAGAT ACCCAAAATG GTAGATTCAC TCTCTTTGTG GTATGGCCAT 
    CTATCTGCTT CAATTATACA ATCAAAGGAA ATGGTATTTG CTAGATCTAT 
    ATTAAGATTC TACCACCTAG GAAACTTCAA GCGTTTCTTC TGCGCCATAG 
    CAGCTGAAGG AACCGATCTT CAGCTGCGTC TGTTAGAACC TTTTCTCAAT 
    GAGGCTCGTG TTAGAGCATT AATGTACTTC AATCATAGTG GCTACAAACT 
    TCAACACCAC CCTTTGACAC ATTTATCAGA AATCCTAATG ATCGAGGAGC 
    TGGACCTGGA AACTCTTTGT AGATTATGTG GACTTGAAAT TAGCAACAAC 
    GAAGATACGA AAGCTTTTGC TCCTAAACAG GCGAGTTTCT GCGTACCAGC 
    ATCAATTCCT CAAATTAATG GCATTTACAT ATCAAGGGAG AATCAAAGGT 
    GAAAAAAATA TTGTAGCGAA TGTAAAATGT ACTCCATTCT TCACTTGTTC 
    AGTTGTGTGC TAAAGCACCT ATACTTCCAA GTATCCAATA CGGAAAGCAA 
    TTGATCCCAG TAAAAGAAAA TTACGAATGA TAACAGTACA TTTTCTTGTA 
    TTCTCTCCAA CAAAGTGTAT TTTGTGAGCT TCGATGAGTA GTTCAGTATT 
    CTCTTC

    Gene models with high sequence identity

    1. AT3G54380.3 [+] show detail - SAC3/GANP/Nin1/mts3/eIF-3 p25 family
      E-value: 3e-64; Score: 244.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR12436 2.90000354677958e-38
    HMMPanther PTHR12436:SF3 2.90000354677958e-38
    HMMPfam SAC3/GANP/Nin1/mts3/eIF-3 p25 3.90000000000001e-28
    HMMPanther 80 KDA MCM3-ASSOCIATED PROTEIN 5e-12
    HMMPanther 80 KDA MCM3-ASSOCIATED PROTEIN 5e-12

    See the detailed result >

    AT3G54380.3

    Model type
    Protein coding
    Short Description
    SAC3/GANP/Nin1/mts3/eIF-3 p25 family
    Computational Description
    SAC3/GANP/Nin1/mts3/eIF-3 p25 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: SAC3/GANP/Nin1/mts3/eIF-3 p25 family (TAIR:AT3G06290.1).
    Link
    InterPro Scan - TAIR