K35912

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35912

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35912

Determination of introduced cDNA(s)

  • J023124E13 - Rice Full-length cDNAs - Original: J023124E13

    full reading [+] show sequence

    Nucleotide sequence: J023124E13 - full reading 
    CAAAAAAGAA GGGAAGGACG ACCCAGAAGT TCCTGCCGGG GGTAGCGGCG 
    CGGCGGCCGT CGGGCGGCGG CGAGAAGAAA GAGGAGGAAT CTTGGGCCGC 
    TGTAATCTTT CCTTCGAACC CGAACCCTCC TTCTCCTCCC TGCACCATCT 
    CCGCATGGAA TCGGGGCCCA AATCGGAAGC AAAACAAGAC GAGGAGGGAT 
    CGAGTGCGAT GGGCGGCGGC GGCGGCAGCA GCAGAAGCAG CAAGGTGTAT 
    CACGAGAGGC AACGGCTGCA GTTCTGTCTC CTCCACGCCC TCAACAACCT 
    TATGCAGGAA AAGGAATCTT TCACCCGAGC TGAGTTAGAT GGGATTGCTG 
    GAAATCTCGT CCAGATTGAT CCAAATAAGG AGCACTGGAC TCCTATGTCA 
    TTGATTTTTA AGCCCCACCA CAACGTATTC ACCGGGAACT ATGATGTAAA 
    TGTACTCATC ACAGCATTAG AAGCTAGAAA GAAGAAGGTA ATCTGGCATG 
    ATCATCGGAA AGGGGCTTCT TCAATCGATC TGGATGCAGA TGCATTGTTT 
    GGTCTGATGA TCAATGTACC CGTCAGGAGG TTCAGAGGGC TTTGGACTGG 
    CCGGCATTGG GTGGCAATTC GAAGCATTAA TGGCACTTGG TTTAATTTGG 
    ATAGTGATTT TTCTGCACCC AAGGAGTTTC AGGACAAAGA AAAACTTATT 
    GCATTTCTAG ACAGCATTCT CAGTCAAGGT GGAGAAGTCA TGATAGTGCT 
    GCAAGATGAA TAACAATGCT GCTTCAAATG CCAAAAGTCT ACAGCAATAG 
    CTTGAAGCTT CTCATATGTG ACTTGCAGTT GTTACTTGTT GTTACCCGTA 
    CATACTTCAG GACTGATTTT GTAGTGAGAT GCATCTGCAG CTGCAATTCC 
    TCTGAAAACT TACCATTTTG TTGGTGAGCA TAATGGATAG GGCCATTCAG 
    TACATGGAAG GTCCAATTCT CCAAACGTAC AGCTGATGAT TTTCTACTAC 
    TGTCACGGTC CATGGCCTTT CTGTTTAATT GTTCAGCAAG TCAAATGCAA 
    ACAAGTAATG AGCAGAGACA GAAAACCTGC TTGCTGAGAC ATCGACTGTG 
    CACAATTACA TGTTTCTTAT GCCATAGTGC ATGAAAACCA CCTTTTTTCT 
    TGGCGGAGGG AGTAATATTG TGGTGTTAAT CAATTGTCAA TGAAAACATG 
    TTGCTTGTGC TGTTTGCATG GATATCACCT TTTTTTTTGG GGCGGAGGGG 
    ATTGTGTTGA TAGAGATAGT GTAGTTTTGC TGCAATAGTT GTATATGTTA 
    TGTGGAAAAC CACATTAAGT CCGCATTTTG GGGCACTCAT ACAATTTGTT 
    GATTCATCTT GTAAAATGGA AAGTTGTAGC TTTGTTTTAA GTAGTGTTAG 
    TTTTGCTGCA ATAGTTGTAT ATGTTCTGTG GAAAACCATA TTAAGTCC

    Gene models with high sequence identity

    1. AT2G29640.1 [+] show detail - JOSEPHIN-like protein
      E-value: 3e-58; Score: 223.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther JOSEPHIN 1, 2 7.7e-28
    ProfileScan Machado-Joseph disease protein MJD 45.98
    HMMPfam Machado-Joseph disease protein MJD 5.6e-60

    See the detailed result >

    AT2G29640.1

    Model type
    Protein coding
    Short Description
    JOSEPHIN-like protein
    Computational Description
    JOSEPHIN-like protein (JOSL); CONTAINS InterPro DOMAIN/s: Machado-Joseph disease protein MJD (InterPro:IPR006155); BEST Arabidopsis thaliana protein match is: josephin protein-related (TAIR:AT1G07300.1); Has 526 Blast hits to 526 proteins in 96 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR