K35930

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K35930

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35930

Determination of introduced cDNA(s)

  • J033073D22 - Rice Full-length cDNAs - Original: J033073D22

    full reading [+] show sequence

    Nucleotide sequence: J033073D22 - full reading 
    GGAGTGCAGT GCAGGGAATC ATTTCATTTC TTCTTCTTCT TCGCCGCCGC 
    CGCCACCTTC CACCCCTTCA GCCGCCACTC CAATCCAAGG AGGATGAGTG 
    AAGAGGACAC CAATGCTGCT GCTGGGCAGC CCAGGCGCGC CCCTAAGCTC 
    AACGAGAGGA TCCTGTCCTC CTTGTCGAGG AGATCAGTAG CTGCACATCC 
    GTGGCATGAT CTTGAGATCG GCCCTGGTGC TCCTGCTGTC TTCAACGTTG 
    TTGTTGAGAT CACCAAGGGA AGCAAAGTGA AATATGAGCT TGACAAGAAA 
    ACTGGACTGA TTAAGGTCGA CCGTGTCCTA TACTCATCAG TTGTGTATCC 
    CCATAATTAT GGTTTCATTC CAAGGACACT TTGTGAAGAC AATGATCCAA 
    TGGATGTTCT GGTCCTGATG CAGGAGCCTG TTATTCCTGG TTCCTTCCTC 
    CGTGCTAGAG CAATTGGCCT TATGCCCATG ATTGACCAGG GTGAGAAGGA 
    TGACAAGATA ATAGCAGTAT GTGCTGATGA TCCTGAATAC CGTCATTACA 
    ATGACATCAG TGAGCTGTCT CCTCACCGCC TCCAAGAGAT TAAACGCTTC 
    TTTGAAGACT ACAAGAAGAA TGAGAACAAG GAGGTTGCTG TTGATGCATT 
    CTTGCCTGCC AACACTGCTC GTGACGCCAT TCAGTACTCC ATGGACCTGT 
    ATGCGCAATA TATCTTGCAA AGCTTGAGGC AGTAGAGTGC TACCCGATCT 
    TTATCGTGAA AATATTGTAT TTGTGCCAAC TGCAAAACTG GAGTAGAGAC 
    TTTGTTCACA AAAATGGAGT GCTATGGGGC TGGCTATGAT TTCCTTTACC 
    CTCCAGCTGT GTATCAATTT GCATGTGGTT TCATACTTAC AAATTATGAA 
    TAAGTGAAGT TTGGGCAGAC ATGAATTTGT TCTGTGTC

    Gene models with high sequence identity

    1. AT2G46860.1 [+] show detail - pyrophosphorylase 3
      E-value: 1e-101; Score: 366.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Inorganic pyrophosphatase 0
    Gene3D Inorganic pyrophosphatase 1.8e-63
    HMMPfam Inorganic pyrophosphatase 3.4e-58
    HAMAP IPYR_MF_00209 32.104
    superfamily Inorganic pyrophosphatase 6.9e-77
    HMMPanther Inorganic pyrophosphatase 1.4e-98

    See the detailed result >

    AT2G46860.1

    Model type
    Protein coding
    Short Description
    pyrophosphorylase 3
    Curator Summary
    Encodes a protein that might have inorganic pyrophosphatase activity.
    Computational Description
    pyrophosphorylase 3 (PPa3); FUNCTIONS IN: inorganic diphosphatase activity, pyrophosphatase activity; INVOLVED IN: phosphate metabolic process, metabolic process; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: pyrophosphorylase 1 (TAIR:AT1G01050.1); Has 5975 Blast hits to 5975 proteins in 1836 species: Archae - 171; Bacteria - 4302; Metazoa - 246; Fungi - 260; Plants - 270; Viruses - 0; Other Eukaryotes - 726 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR