K35941

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K35941

Determination of introduced cDNA(s)

J033097K02 - Rice Full-length cDNAs - Original: J033097K02

full reading [+] show sequence

GAACGCAAAA CTCTCCCCGC GCGCCACGGC GCGTCCGAGA ATAGCCACAG 
CCACCCCGCG CGCAACGCCG CAACGCCCGC CCGTCGCGCG CACCAGCGCC 
GTCGCGCGCG GCGCGCCACC CCAGCCCCCA ACACACAAAA GCAACGCCAA 
GCCTCGCACG CGCGCGAGGC CGACGCAAGG AGGAGAGGCT GCCCCGGGGT 
GAGAGAGAGA TCACCCGCCT CGCCGCCCGC CCGCGCCGCG GCGGATCGAT 
GGAGCTGTTC GAGCGCGCGA GGACGGTGCG GCTGCGCGGC CACCATGACA 
AGTACCTGTA CGCGGAGGAG GACGAGTCGC GCGTCTCCCA GGACCGGAGC 
GCCTCGTCCC CGAACGCGCG GTGGTCCGTC GAGCCGGTCC CCCACGCCCC 
CGGCGTCCTC CGCCTCCGCA GCCACTACGG CCGCTACCTC TCCGCCTCCA 
ACGAGCCCTT CCTCCTCGGC GTCACCGGCC GCAAGGTCCT CCAGGCCCTC 
CCCCACCGCC TCGACTCCTC CGTCGAGTGG GTCCCCGTCC GCGACGGCGC 
CCACGCCCGC CTCCGCACCC GCTACGGCAA CTACCTCCGC GCCAACGGCG 
GCCTCCCGCC GTGGCGCAAC TCCGTCACCC ACGACGTCCC CCACCGCCAC 
GCCGGGTGGA TCCTCTGGAC CGTCGAGGTC GTCGAGGTCC TCCCGGAATC 
CCTCGTCCCG CCCCCATCGC CTCCGACGAC GACCCCGCCG CGCCGCATTA 
CAAGACACCT TCTCGCGGGC CCTCTCCCGT GCCGACGCCG GCGCTGGCGC 
CTGCTTCGCC GCCGCGGCAC CGTCCGGCGA GCCCACCTTC GTACTTAGCG 
CGGCCACCGC CGCCGCCACC GGGCTACATC GAGCCACCAC AGGGATACAT 
CGAGCCACCT CCACCGGAGC CCACCCTGGC GAGAATTGAG TCCACAGAAT 
CCTTCTCGCT GCCGCTGCAC AAGGTGGATG GGCGGGCGAT CCACTACCAC 
ATTGGGGATG ACAACGGCGA CATCGGCGAT GATCAGGAAG GACACTCATT 
CACGTTCAAC GGGACTAGCC TGGAGGAGCT TTTGGAGAGG TTGCAGGAGG 
AGACGGGGCT CAACGACGTG ATTATCTGCT CTCGTAGCCC GATCAATGGG 
AAGCTCATGC CCCTCCGCTT GCAGCTGCCG CCCAACAACG CCGCCATGCA 
TATCGTGCTC GTGCGTGAGT CATCAAAAGT GGCAAAATCA TTTCCATGAC 
CATGTGGTAA AATTTGAAGA GGGTGGTGTC AGCGACTCAA ATCAAGCAAG 
AACTGTGCAT CTGTTGTATA TATTGTAATC CCTGTTTATT ATCAGTTCCA 
CTGGCTACCA TAATCAAGTA TTATTCTTCC ATCTTCAGGA GATCTCATTC 
TTGTAAGTAT TTGCTTCTGT CAACTTTTTT ATCATTTATT CAACAGGTAG 
AGTGATCTCT GGTAGCTAAA GACCCTTCAA AATGCCTATC CTGTCATTCC 
TCAGTTCTAT AGAATAAACT ATTCTCTAGG

Gene models with high sequence identity

AT1G59710.1 [+] show detail - Protein of unknown function (DUF569)
E-value: 9e-51; Score: 198.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Actin cross-linking	2.7e-28
HMMPfam	Protein of unknown function DUF569	1.8e-61

See the detailed result >

AT1G59710.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF569)
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: Actin cross-linking protein (TAIR:AT1G27100.1); Has 232 Blast hits to 209 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 232; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR