K36015

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36015

Determination of introduced cDNA(s)

J033070C12 - Rice Full-length cDNAs - Original: J033070C12

full reading [+] show sequence

GAGTTGGCTT CCCACCACCA CCACCACCAC CACCTCCTCT CCTCTTCTCT 
CCAGGCGCGC CGCTGTGCCC CTGTGCTCAC CTCTCGTCGC GGTCGCCCTC 
GACGGTTCCA CCACCCGCGG ACCCCGCTCG CCGCCGCCGC AGCCGTGCGC 
GGATCGCGAC GACGCGAGGC GATCGGCGAG CGGCCCGGGG GAGGGGAGGA 
GATCGCCCGT CGGCGCCCCC CCGGCCCCGC CGAGCCGCGT CTCCTCCCGT 
CCGATCGCGG GGCTTCCTGG GGCTTCAGTG TGCGCCACTT CTCTCGGGAC 
GGGACGGGAC GGGCGCGATT GCGGCAGATG AGACATGGCT TCTATGTTAA 
ACATTGTTAT AGGCTCTCAT GTCTGGGTGG AAGATAAAGA TTCAGCTTGG 
GTTGATGGTG AGGTCTTCCG GATTGATGGT AAAAATGCCC ATGTTCGCAC 
AACCAAGGGA AAGACGGTTA TTGCAAATGT ATCAGATATA CATCCTAAAG 
ACACAGAAGC ACCACCTGAT GGAGTCGATG ACATGACAAG GTTATCATAC 
TTGCACGAGC CTGGTGTTTT AGATAATCTG GCTGTCAGAT ATGCAAGAAA 
TCTAATCTAT ACCTATACCG GCAATATCCT GATTGCCATA AATCCGTTCC 
AAAGGCTGCC TAATCTTGTT GATGTCCGAA CTATGGAAAA ATACAAAGGT 
GCAAACCTTG GGGATCTAGA TCCTCATGTA TTTGCAATAG CTGATGTCTC 
TTACAGGCAA ATGATGAATG AAGGAAGGAA CAATTCCATT TTGGTCAGTG 
GTGAAAGTGG AGCTGGTAAG ACTGAAACGA CGAAACTGCT GATGAGATAT 
CTTGCATATT TGGGTGGGCG GTCTGGAACA GGAGGAAGGA CGGTTGAACA 
GCAGGTTTTA GAATCAAACC CAGTCCTTGA AGCTTTTGGG AATGCAAAAA 
CTGTTCGGAA CAACAATTCA AGTCGATTTG GTAAGTTCGT TGAAATCCAA 
TTTGACAAGA GTGGGAAGAT ATCTGGCGCT GCTATTAGAA CTTACTTGCT 
TGAGAGATCT CGAGTCTGCC AAATCAATAG TCCAGAGCGA AACTACCATT 
GCTTTTACTT CCTCTGTGCT GCGCCACCAG AGGATATAAA AAGGTATAAG 
CTGGGGGATC CATCTTCATT TCATTACCTC AATCAGTCGT CTTGCATTAG 
AGTTGATGGT ATCAACGATG CTGAAGAGTA TCTTGTAACT AGAAATGCTA 
TGGATACAGT TGGCATCATT GAGCAAGAAC AGGAAGCTAT ATTCCGGGTT 
GTTGCTGCTG TGCTGCATCT TGGAAATATT AATTTTGCAA AGGGGAGTGA 
GGTAGATTCA TCTGTTATAA AGGATGACAA ATCTAGATTC CATCTTAATA 
CAGCCGCAGA GCTCTTGATG TGTGACTGCA AGAAGTTGGA GAATGCCTTG

Gene models with high sequence identity

AT5G20490.1 [+] show detail - Myosin family protein with Dil domain
E-value: 9e-170; Score: 593.00

InterPro Scan Digest

Program	Description	E-value
superfamily	P-loop containing nucleoside triphosphate hyd	1.8e-124
HMMPfam	Myosin head, motor domain	1.4e-114
HMMPfam	Myosin, N-terminal, SH3-like	1.8e-09
Gene3D	no description	6.6e-82
Gene3D	no description	2.1e-08
HMMSmart	Myosin head, motor domain	2e-34
FPrintScan	Myosin head, motor domain	2.7e-35
FPrintScan	Myosin head, motor domain	2.7e-35
FPrintScan	Myosin head, motor domain	2.7e-35
HMMPanther	MYOSIN XI	1.9e-237
HMMPanther	MYOSIN	1.9e-237

See the detailed result >

AT5G20490.1

Model type: Protein coding
Short Description: Myosin family protein with Dil domain
Curator Summary: Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant.
Computational Description: XIK; FUNCTIONS IN: motor activity; INVOLVED IN: in 11 processes; LOCATED IN: endomembrane system, myosin complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 40570 Blast hits to 26875 proteins in 2480 species: Archae - 466; Bacteria - 5527; Metazoa - 21427; Fungi - 3168; Plants - 2202; Viruses - 135; Other Eukaryotes - 7645 (source: NCBI BLink).
Link: InterPro Scan - TAIR