K36240

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36240

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36240

Determination of introduced cDNA(s)

J023009C24 - Rice Full-length cDNAs - Original: J023009C24

full reading [+] show sequence

GGGAGCTCCA GGCCCCACCG CCACCGCCAC CGCCCACGCC GCCGCTCCAT 
GATCCGCCGC CGCGCGGCGG CGGTAGCGAC ACTACGCGCC TCCCTGCGCC 
GCACCCGCTC CCACGCCGCC GGCGACTCCG AGGACCCCCT GAAGGACTTT 
GGGTACAGGC CGTCTAAGGT GACCTACAAT GCACTGGTCC AGGTGCTCTC 
GAGCGCGGGG CAGGTGGACT TGGGGTTCCG GGTTCAGAAG GAGATGTCCG 
AGTCGGGGTT CTGCATGGAC CGGTTCACCG TTGGGTGCTT TGCGCACGCT 
CTGTGCAAAG AGGGGCGGTG GGCTGATGCA CTAGACATGA TAGAGAGGGA 
GGATTTCAAG CTTGATACAG TATTATGCAC ACATATGATC AGCGGGCTGA 
TGGAGGCATC GTATTTTGAC GAGGCCATGT CATTCCTCCA TAGGATGCGA 
TGCAACTCAT GTATTCCAAA TGTGGTCACA TATAGGACGT TGCTCTCAGG 
ATTTTTGAAA AAGAAACAGC TTGGCTGGTG CAAGAGGATC ATTAATATGA 
TGATGACTGA GGGCTGCAAT CCAAATCCAT CCTTGTTTAA TTCCCTTGTG 
CATAGTTATT GCAATGAAAA GGATTATGCG TATGCCTATA AACTTTTAAA 
TAGGATGACT ACTTGTGGTT GCCCTCCTGG TTATGTTGTG TACAATATTT 
TTATTGGAAG TATATGTGGT CAGGAGAAAT TACCAAGCCC TGATTTGCTG 
GATTTAGCTG AGAAAATTTA TGGAGAGATG CTGGCTGCTA ATTGTGTTCT 
TAATAAGGTT AACGTTGCCA ATTTTGCTCG ATGCCTTTGT GGTGTCGGGA 
AGTTTGACAA GGCATTTCAG CTCATAAAGG AGATGATGAG GAAAGGTTTT 
GTCCCTGATA CAAGTACATA CTCTAAGGTG ATCACTTTTC TCTGCCATGC 
TACTAAGGTA GAGAAAGCTT TCCTTCTGTT CCAAGAGATG AAGATGGTCG 
GTGTAACTCC TGATGTGTAT ACATACACAA TTTTGATTGA CAGCTTTTGT 
AAAGCTGGAC TCATTGAACA AGCCCAGTGG TTGTTTGAGG AGATGAGGAG 
TGTGGGTTGC TCCCCAACTG TGGTGACATA TACTGCACTT ATTCATGCTT 
ACCTCAAAGC TAAGCAGGTA CCTCAGGCTA ATGATATTTT TCACCGAATG 
GTTGATGCTG GCTGTCGTCC AAATGATGTT ACTTATGGTG CATTGGTAGA 
TGGTCTCTGT AAAGCAGGCA ACATCAGTAA GGCTTTTGAA GTCTATGCCA 
AATTAATTGG AACTTCTGAT AGCGCCGATT CTGATTTTTA CTTTCCATGT 
GAGGACAGAC ACACACTTGC TCCAAATGTT GTGACATATG GTGCACTAGT 
AGATGGTTTA TGCAAAGCTC ACAAAGTGGA CCATGCTCAT GAATTACTAG 
ATGCTATGTT ATCTTCTGGT TGCGAGCCCA ATCACATTGT GTACGATGCT 
CTTATTGATG GCTTTTGCAA AGCTGGAAAA ATTGACAGTG CTCAGGAGGT 
ATTTCTGCAG ATGACAAAGT GTGGGTACCT TCCCAGTGTA CATACGTACA 
CCTCGTTGAT TGACAGGATG TTCAAGGATG GAAGACTTGA TCTTGCAATG 
AAAGTTCTCT CTCAGATGTT AAAGGATTCT TGTACTCCTA ATGTTGTTAC 
GTACACAGCT ATGATTGATG GTCTTTGTAG GATAGGTGAA AGTGAGAAGG 
CACTAAAGCT TCTGTCATTG ATGGAAGAGA AAGGATGCAG TCCGAATGTT 
GTAACTTACA CTGCTCTAAT AGATGGATTA GGCAAAGCTG GCAAGATTGA 
TCTGAGTCTT GACCTTTTTA CACAAATGAG CAGAAAAGGA TGTTCTCCCA 
ATTATGTTAC GTACAGAGTT CTGATAAACC ACTTGTGTGC TGCTGGCCTT 
TTGGATAAGG CTCGTTTACT GCTTGGTGAA ATGAAGCAGA CTTACTGGCC 
AAAGTACTTA CAAGGATACC GTTGTGCAAT TCAAGGTTTC AGCAAGAGCT 
TTATCGCTTC TCTGGGTATT CTGGAGGAGA TGGAATCATA TGGCACAGTA 
CCAATTGCAC CTGTTTATGG AATGCTGATC GATTGTTTCT CCAAAGCTGG 
CAGGCTGGAG ATAGCTATGG AGTTGCACAA AGAGATGATG GAAGTTCCGT 
CATCTGTAAA AACTGACAAT GACATGTACG CTTCATTGAT CCAGGCACTT 
TGTTTAGCAT CTCAAGTTGA GGAAGCATTT CGATTGTATA GTGAAATGAC 
AAGGAGAGGC TTTGTACCTG AGTTAAGTGT CTTTGTTTGC CTCATAAAGG 
GATTAGTTGA AGTAAAAAAG TGGGACGAAG CCCTCCAGTT GTGCTATGGC 
ATATGTCATG AGGGTGTGAA CTGGCAGGGT AACAAATCTT TTCATGGAGG 
CTAGAGCTGT TTTGTCTTAC TGCATCATAA ATCATGCAAA TGACAACACT 
TCCACCTAAG GAGTCATGTT CTTGTATCTC AAGATTGTTG CGAGATGTGG 
TGACTCAGAG ACCTAAAGTG CAATTCATGA TGACTCAAGA AAAATAACTC 
GGAGGCCATG GAATAACACT ACAGAATGAA CAATCCTGCA TGAAAAGATG 
TACCATGGAT AGCTGATTCA TCTTCAGATG GGCAAAGCCA CAAAGGAATC 
TCGCTATGGT TATCAAGTTC AACATTTGTA TATAAGGCAA CGATGGTTAT 
ACAAAAGGCA TTTGACTG

Gene models with high sequence identity

AT1G06710.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
E-value: 0; Score: 906.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Pentatricopeptide repeat	8.5e-07
HMMTigr	Pentatricopeptide repeat	0.98
HMMTigr	Pentatricopeptide repeat	1.9e-06
HMMTigr	Pentatricopeptide repeat	4e-06
HMMTigr	Pentatricopeptide repeat	7.3e-05
HMMTigr	Pentatricopeptide repeat	0.64
HMMTigr	Pentatricopeptide repeat	5e-06
HMMTigr	Pentatricopeptide repeat	5.9e-07
HMMTigr	Pentatricopeptide repeat	3e-08
HMMTigr	Pentatricopeptide repeat	1.8e-09
HMMTigr	Pentatricopeptide repeat	0.0001
HMMTigr	Pentatricopeptide repeat	1.7e-10
HMMTigr	Pentatricopeptide repeat	8.9e-08
HMMTigr	Pentatricopeptide repeat	1.5e-08
HMMTigr	Pentatricopeptide repeat	3e-12
HMMTigr	Pentatricopeptide repeat	9.8e-10
HMMTigr	Pentatricopeptide repeat	0.17
HMMTigr	Pentatricopeptide repeat	0.0021
HMMTigr	Pentatricopeptide repeat	1.1e-07
HMMTigr	Pentatricopeptide repeat	0.12
HMMPanther	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	7.6e-183
superfamily	TPR-like	1.7e-27
superfamily	TPR-like	4.3e-20
ProfileScan	Pentatricopeptide repeat	10.084
ProfileScan	Pentatricopeptide repeat	9.602
ProfileScan	Pentatricopeptide repeat	6.522
ProfileScan	Pentatricopeptide repeat	9.679
ProfileScan	Pentatricopeptide repeat	11.17
ProfileScan	Pentatricopeptide repeat	10.117
ProfileScan	Pentatricopeptide repeat	10.907
ProfileScan	Pentatricopeptide repeat	14.074
ProfileScan	Pentatricopeptide repeat	12.101
ProfileScan	Pentatricopeptide repeat	9.449
ProfileScan	Pentatricopeptide repeat	12.967
ProfileScan	Pentatricopeptide repeat	12.474
ProfileScan	Pentatricopeptide repeat	11.203
ProfileScan	Pentatricopeptide repeat	13.822
ProfileScan	Pentatricopeptide repeat	13.285
ProfileScan	Pentatricopeptide repeat	9.054
ProfileScan	Pentatricopeptide repeat	12.222
ProfileScan	Pentatricopeptide repeat	8.462
ProfileScan	Pentatricopeptide repeat	6.61
HMMPfam	Pentatricopeptide repeat	0.0006
HMMPfam	Pentatricopeptide repeat	0.0052
HMMPfam	Pentatricopeptide repeat	0.046
HMMPfam	Pentatricopeptide repeat	0.0011
HMMPfam	Pentatricopeptide repeat	0.0052
HMMPfam	Pentatricopeptide repeat	0.0019
HMMPfam	Pentatricopeptide repeat	6.3e-09
HMMPfam	Pentatricopeptide repeat	6.5e-06
HMMPfam	Pentatricopeptide repeat	4.7e-05
HMMPfam	Pentatricopeptide repeat	3.4e-06
HMMPfam	Pentatricopeptide repeat	1.3e-06
HMMPfam	Pentatricopeptide repeat	0.00015
HMMPfam	Pentatricopeptide repeat	1.5e-09
HMMPfam	Pentatricopeptide repeat	1.5e-07
HMMPfam	Pentatricopeptide repeat	0.00013
HMMPfam	Pentatricopeptide repeat	4.2e-05
HMMPfam	Pentatricopeptide repeat	1.3e-05

See the detailed result >

AT1G06710.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6; Bacteria - 56; Metazoa - 772; Fungi - 1057; Plants - 62952; Viruses - 0; Other Eukaryotes - 2380 (source: NCBI BLink).
Link: InterPro Scan - TAIR