K36316

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36316

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36316

Determination of introduced cDNA(s)

  • J013108E08 - Rice Full-length cDNAs - Original: J013108E08

    full reading [+] show sequence

    Nucleotide sequence: J013108E08 - full reading 
    GATTCCTCAT TCCTTCTCTT TTTTTCTCGC TTTGTTTCTC CCGTCGTCTG 
    ATCCACCACC GCAACGCACG CACGCACGCG CGCCTCCTCC TCCCTCCGCG 
    GCGGCGACCA CCGCGCGCGA CGCCATCGCC GCCACCTAGG GTTAGGGTTC 
    CGGCGACCCC CACCCCCGGC GATCGCGCGA GGGATCCATC CGTCCTCTCC 
    TCCATGTCCA CCGACCAGCC TCACCTCCCG CCCCCCGCGC CCCCGCCCGG 
    CGCCGCGGCG GCGGATCCCC CCGAGTCCAC CCCCGCGCCG CCTCCGCCGC 
    CGCCGCTCGA GCCACCCGAG GTGATGCACA AGACGAGGGC CGTCGACTTC 
    CTCGGCCGCC GCACCCCAAT CGTCTACCAG AACGACAACG GGCCGTGCCC 
    TCTCCTCGCC ATCTGTAACG TGATGCTGCT GAAGAATGTG ATCAGCTTGA 
    ACCCGGACGC GGGCGAGGTG TCGCAGCAGA AGTTGCTCTC GCTCGTCGCC 
    GAGCGCCTCA TCGACTCCAA CAGCAATGTG CAGGGTAAGG ACGAGGAGTA 
    TGTGCGCAAC CGGGAGCAGA ACATCTCGGA TGCGATTGAC CTTTTGCCGC 
    GCCTCGCGAC CGGCATTGAT GTGAATGTGA TGTTCAGGAA GATCGATGAC 
    TTTGAGTTCA CCCGAGAACG TGCCATATTT GACCTTCTGG ATATCCCGCT 
    GTACCATGGG TGGATAGTAG ATCCCCAGGA TACTGACACT GCTACTTCCA 
    TTGGATCAAA GTCTTACAAT GCTCTTGCAT CTGGGCTTGC TGAATTTAAG 
    TCGGGGGAAT CAACAAAAGA GAATAGACAT GTACAGGAGG AAGAAACTGT 
    TGATTTTGCT GCTGCAACTA CTGCAGCACT AGGGGTTCCT TCTCCTAGTG 
    TTTCTCGAGG TATATCATTT GATGAAAATA CACTCACTGA CCCAGTTGAG 
    TTGCACATAA GACGAGGCGA TCGTGAGGAA GAAGAGGAAC TAAGGAGAGT 
    CCTTAGTCTA TCAAAAGCTG AAAATGCTAA TGCTGTTGAT GGATCTGGTT 
    CCTTTGACAC TTCACAGTCT CATTCATCCT CAAATATGGA GGAGACAGCA 
    CACACTGAGA GCTTCCAATT AGAGGCAGTC GAGGCGATGG ATTCAACAAA 
    TAAGGAGGAA CATGGCAACA GCCATGCTTT GAGCGATGGC CCTATGTTAC 
    AGGACACCAC AAATGCTGCT CCTAATATTA ATGAAGTTGG GATGGAGGAA 
    TCCCAACAGG TTTTGACGTC TAATGAACTA GAAGACGATG GGAAAAGGAA 
    TATCTTGCCA GAGCACTCTG ATATAACCAT TCAACCTTCA GAGTCTGTGC 
    TTGACTGTTC CTCTCATGAG TCTTCTGCTC CCAACCAAGC TGCTCCTGCC 
    CTTGGGCAAG TTGATAAAGA ATCCTGTGAA GAACAAGCTC CCTTGCAAAT 
    TCATGGTCAG GCTTCTGACA CTGAGAAAAT TCATGGTCAG GCTTCTGACA 
    CTGAGATTAG CTCTGAGCTA ACAACTGCAG CTAGTCAAGA TACCCCAAAT 
    CATGCTACTA AAGAGCTGGA TGGGGAAGAT GGCAATAGTC CTGAGCCTAT 
    CATCTTAAAC CTTCAGGAAA GTGAGCCAAT ATATCAAGGA GAAGAGCACA 
    TACTTAGCAC TGGAAACTTG GCATATGAAA ATCAGGAGCC GGTTTATGAG 
    GGAGAGGTGG TTCTTGCTGA ACAAGCTGAC AAGACTGAGA AAAGTAGTGA 
    GGACATGCAA GATGGGCCTG CAGAACATCA ATGGGAACTA ATAGATAATT 
    TCCTTCAGAA CACTGCTAGC CAGCTAACTG TCTATGGTTT ATTTTGTCTA 
    CAAGAGGGTC TTAATGAAAG AGAGCTGTGC GTCTTCTTCC GTAATAATCA 
    TTTCAACACA ATGTTCAAGT ACAATGGAAG CCTATATCTC TTAGCCACTG 
    ATCAGGGTTT TTTCAGCCAA AGTGATTTAG TATGGCAAAA GTTGGATGAG 
    GTGAATGGAG ATGGAGTTTT TCTGACCAGC AATTTCACAC CATTTAAGGC 
    TGAAAACCCG AGAAATGATT CTTGGAATGA ACAGCAGGCT ATGACAAGTA 
    CCGCTGACTA TCTTGCTCAA TTTGACAATA CTACCCTGCA GCACTCGTCT 
    GGAAACTCTG ATCTAGAGCT AGCTATAGCA CTTCAACAAC AGGAGTTTGA 
    GCGGCAACAA CCTCAACGAC ACCAGTCGTC AACACAGCAG CAGGAGCCGG 
    TGCCCCAGCA GCAACAGCAG ACACCCAATC AATCACATGG CACAGGTCGG 
    CCAGGATTAG TTGTTGGTCC AACAACGGCA AGGAGGCCAC CTGCTCCACA 
    GCCGACGACG CCGAAGAAAG AGAAGTGCAT CGTGATGTAA AGATACAACA 
    TATCGGAGAC GGGACAGGAG AAAGGAAAAG GGAGGGGGAC AAGGAGCATC 
    ACATAGTATA CTGTAAAGAA TCTTCTTGTC TACTCTTCTT CTTTAGTGCC 
    GCGGCATAGC AGCAGCCTGT TGTTTTTTTT AGCCACTTTT CCCAATCTTG 
    AGCGCTCTTC ATTTTGCGTG TTTTTTCTTC CCTGGTGTAA ATAACCTTCA 
    AAGAAGTCAT AAAACGTAAA CAGATGCTGT CAAATGATAG CCCTCCAACG 
    CGATGTGATT GGTTCATCGT ATAGT

    Gene models with high sequence identity

    1. AT4G11860.1 [+] show detail - Protein of unknown function (DUF544)
      E-value: 3e-126; Score: 450.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF544 1.2e-37
    ProfileScan Ubiquitin interacting motif 8.646
    HMMPanther Protein of unknown function DUF544 5.6e-54

    See the detailed result >

    AT4G11860.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF544)
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF544 (InterPro:IPR007518), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF544) (TAIR:AT4G22960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR