K36536

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36536

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36536

Determination of introduced cDNA(s)

  • J033124L23 - Rice Full-length cDNAs - Original: J033124L23

    full reading [+] show sequence

    Nucleotide sequence: J033124L23 - full reading 
    GACGAGCTGC AAAAATGGCG GCACCCGCCT CGCCACTCCA CCCTCTCGCC 
    GCCATAGCAG CAGCTCTCCT CCTCCTCCTC GTCGCAGCCC CCTCTGCAGC 
    AGCTGCAGCT AGCCCCGTCT TCCCCGGAGT CCCTCCCCTG CAGCTGCAAG 
    CTCTGCAGCA GCGGCGGCCG GCGAGCTCCG CCGGCGGCAG CAGGTATGTC 
    GTCGCCGCGG CGGCGGCGGC GGCCGGAGGG AACGGCACAG CGGCGGCGGC 
    GAAGCCGTTC ACGGCGCACT ACTTCCCGCA GGAGCTGGAC CACTTCACCT 
    TCACGCCCAA CGCGTCGGCC GTCTTCTACC AGAAGTACCT CGTCAACGAC 
    ACCTTCTGGC GGCGGAGCGC CGCCGCCGGC GAGACGCCGG CCGGGCCGAT 
    ATTCGTGTAC ACCGGCAACG AGGGCGACAT CGAGTGGTTC GCCACCAACA 
    CCGGCTTCAT GTTCGACATC GCGCCCAGCT TCGGCGCCCT GCTCGTCTTC 
    ATCGAGCATC GATTCTACGG GGAGTCGAAG CCGTTCGGCA ACGAGTCGAA 
    CAGCTCGCCG GAGAAGCTGG GGTACCTGAC GTCGACGCAA GCGCTCGCCG 
    ACTTCGCCGT CCTCATCACC AGCCTCAAGC ACAACCTCTC CGCCGTCTCC 
    TCCCCCGTCG TCGTCTTCGG TGGCTCCTAC GGCGGCATGT TGGCTTCATG 
    GTTCAGGCTA AAGTATCCCC ATGTCACCAT TGGCGCCGTC GCGTCCTCTG 
    CTCCGATCCT GCAGTTCGAC TACATAACTC CATGGAGCAG CTTCTACGAG 
    GCCGTCTCGC AAGATTACAA GTCTGAAAGC TTCAATTGCT TCAGTGTTAT 
    CAAGGCAGCT TGGGATTTGA TAGATGAGAG GGGATCCACT GATGCAGGGC 
    TCTTACAGCT CAGCAAAACC TTCAGAGCCT GCAAGACTGT GAAATCGGTT 
    TACTCGTTCA GAAACTGGCT ATGGACAGCA TTTGTGTACA CAGCCATGGT 
    GGACTATCCA ACCCCGGCCA ATTTCCTGAT GAATCTGCCT GCCTATCCTA 
    TCAAGGAGAT GTGCAAGATC ATCCACGGCT TCCCTGCAGG AGCAGACATC 
    GTTGACAAAG CTTTCGCAGC GGCGAGTCTG TACTACAATT ACACAGGAGA 
    TCAAACATGC TTCCAGTTAG AGGATGGAGA AGACCCCCAT GGCCTCAGTG 
    GTTGGGGATG GCAGGCCTGC ACAGAAATGG TCATGCCGAT GACGATATCG 
    AACGAGAGCA TGTTCCCTCC ATTCACCTTC ACTTATGAGG GGAAATCTGA 
    TGACTGTTTC CAGAGCTACG GTGTTCGTCC GAGACCACAC TGGATCACCA 
    CTGAATATGG TGGAAATAGA ATTGACCTGG TGCTCAAGAG GTTTGGGAGC 
    AACATCATCT TCTCCAACGG AATGCGAGAC CCATGGAGCC GTGGCGGGGT 
    GCTCAAGAAC ATATCATCTA GTATCATTGC CCTTGTCACG GAGAAAGGAG 
    CTCATCATTT GGACTTCAGA TCAGCAACTA AAGATGATCC AGATTGGGTT 
    GTAGAACAAC GAAGACAAGA AGTTAAGATC ATACAGGGAT GGATAGATCA 
    GTACAACGAG GACCTTGCAC AGATATCAAA ATGAGAAGAT GCAGTTACTG 
    CGACAGACAA TCGAAACATG AGACTGTCTA CACAGTAATC AACTGTTTTT 
    GGCTACATGG AAAAAATAAG GAAAAGGAAT TTTTCTTTCT TGCAGGCTGT 
    TAGACAGAAA ATTAAATTAA GGTAACATAC AGTGGAAACT CAATAAGTCA 
    CCC

    Gene models with high sequence identity

    1. AT2G24280.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 0; Score: 645.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LYSOSOMAL PRO-X CARBOXYPEPTIDASE 1.2e-262
    HMMPanther Peptidase S28 1.2e-262
    HMMPfam Peptidase S28 3.5e-84
    superfamily alpha/beta-Hydrolases 1.6e-10

    See the detailed result >

    AT2G24280.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: serine-type peptidase activity, serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, lysosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: Serine carboxypeptidase S28 family protein (TAIR:AT5G65760.1); Has 1253 Blast hits to 1217 proteins in 170 species: Archae - 0; Bacteria - 7; Metazoa - 611; Fungi - 189; Plants - 249; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR