K36544

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36544

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36544

Determination of introduced cDNA(s)

  • J023031N02 - Rice Full-length cDNAs - Original: J023031N02

    full reading [+] show sequence

    Nucleotide sequence: J023031N02 - full reading 
    GTTACAAACC CGCAAACCCA CTCCGATCGC AAATACTCTC TCTCGCCGAT 
    AGCAGCAGCA GCAGCAATGG CCGCCCTCGC CGCCGCATCC ACCGCCTTCG 
    CCGCCAAGCC GCGCCTGGCG CGCGCGCCGT CGTCCCCGGC CGCGCGGTTC 
    TCCGTGTCGT GCTCCGCGTC GGGCAACAAC GGCGGCGCCG GCGAGATGGC 
    GCAGTCGCTG GCGGCGTCGG CCAAGACGTT CTCCGCGGCG CTGGCGCTGT 
    CCTCGGTGCT GCTCTCCTCG GCGGCGACGT CGCCGCCCCC CGCCGCCGCC 
    GACATCGCCG GGCTGACGCC GTGCAAGGAG TCCAAGGCGT TCGCGAAGCG 
    GGAGAAGCAG TCCATCAAGA AGCTCCAGTC GTCGCTCGCC ATCAACGCCA 
    CCATCGAGAA GACGAAGCGC CGCTTCGAGA ACTACGGCAA GTTCGGCCTG 
    CTCTGCGGCG CCGACGGCCT CCCGCACCTC ATCGTCAGCG GCGACCAGCG 
    GCACTGGGGC GAGTTCATCA CCCCGGGCTT GCTCTTCCTC TACATCGCCG 
    GCTGGATCGG CTGGGTCGGC AGGAGCTACC TCATCGCCAT CAGCGGCGAG 
    AAGAAGCCGG CCATGAGGGA GATCATCATC GACGTCGAGC TCGCCGTCAA 
    GCTCCTCCCG AGGGGGTTCA TCTGGCCCGT CGCCGCCTAC CGTGAGCTCA 
    TCACCGGCAA CCTCGTCGTC GACGACGCTG ACATCGGCTA CTGATCACCA 
    CATGGATGCT TGGCTACTCA AGCCCCAGGT GAGTTGATTT GGCAGTGGAG 
    GAAGAGGGCT CGTGCATGGT GATTTGTGTG GTTTGGGTGT AGAAGCTGAT 
    AGGATCATGG AGGAATGGAA GATCTGTTGT ACTTAAGAAA AACTAAGTCT 
    TGTATACCGT ACCTCTCTCT TGTGTGTATT TACCATCTTA AGATTCTTGA 
    GAACAATTCC TTCGTGC

    Gene models with high sequence identity

    1. AT1G31330.1 [+] show detail - photosystem I subunit F
      E-value: 3e-64; Score: 242.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Photosystem I reaction centre protein PsaF, subunit III 4.5e-73
    Gene3D Photosystem I reaction centre protein PsaF, subunit III 5.7e-53
    superfamily Photosystem I reaction centre protein PsaF, subunit III 8.6e-55

    See the detailed result >

    AT1G31330.1

    Model type
    Protein coding
    Short Description
    photosystem I subunit F
    Curator Summary
    Encodes subunit F of photosystem I.
    Computational Description
    photosystem I subunit F (PSAF); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre protein PsaF, subunit III (InterPro:IPR003666); Has 387 Blast hits to 387 proteins in 119 species: Archae - 0; Bacteria - 139; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 6; Other Eukaryotes - 163 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR