K36744

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36744

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36744

Determination of introduced cDNA(s)

  • J033149B15 - Rice Full-length cDNAs - Original: J033149B15

    full reading [+] show sequence

    Nucleotide sequence: J033149B15 - full reading 
    GCGGGTTCCA ATGTCGAGCG GCGGCGGCGG CGGCGACGAC TACAAGCGGG 
    AGGAGTCGGT GGCACTCATG GTCATCGTCT CCCTCGCGGC GCTCTCCCTC 
    CTCTCCCTCG TCGCCGCCTT CGCCTACTAC TGCTACATCA CCCGCAAGGT 
    CTCCCGCCGC CTCCACTCGC TCGACCTCCC CAAGCACCAC CGCCGCTCCT 
    CCTCCTCCTC GCCTCCTCCC ATGCCCCCGC CGCTGCCTCC CCCTCCTCCT 
    TCCGCGAATG CCCCGACGCT CGGGAAGGAG AGCCCGTCTA GCAACTCCGC 
    CAGCGACGGC GCGGCGGCGG CGGTCGTGGT CGGCGGGGAG AGGGGGGCCG 
    TCCAGGTGTT CAGCTACCGC CAGCTGCACG CCGCCACGGG CGGGTTCGGG 
    CGGGCGCACG TGGTGGGGCA GGGGAGCTTC GGGGCCGTCT ACCGCGGGGT 
    GCTCCCCGAT GGGAGGAAGG TCGCGGTCAA GCTCATGGAT CGCCCCGGCA 
    AGCAGGGGGA AGAGGAGTTC GAGATGGAGG TGGAGCTGCT GAGTCGGCTT 
    CGATCACCTT ATCTTTTGGG CTTGATTGGC CATTGTTCAG AGGGTGGACA 
    CCGGCTGCTG GTCTATGAAT TCATGGCCAA TGGGGGTCTC CAGGAGCATC 
    TCTACCCAAA TGGAGGTTCC TGTGGTGGTA TCTCAAAATT GGACTGGCCT 
    ACTAGAATGA GAATAGCTCT TGAAGCAGCA AAAGGTCTGG AATATCTTCA 
    CGAGCGTGTT AATCCACCTG TTATACACAG AGACTTCAAG AGCAGCAACA 
    TTCTACTGGA CAAGGACTTC CGTGCAAGAG TGTCAGATTT TGGTTTGGCT 
    AAGCTTGGAT CTGATAGAGC TGGTGGTCAT GTATCAACTC GAGTTCTAGG 
    CACACAAGGT TATGTTGCAC AAGAATATGC TTTGACCGGG CATTTGACGA 
    CCAAATCCGA TGTCTATAGT TACGGTGTTG TACTTCTGGA GTTGCTTACT 
    GGCAGGGTGC CAGTTGATAT GAAGAGGCCT CCAGGCGAAG GTGTTCTAGT 
    TAACTGGGCA TTGCCTATGC TCACAGACCG AGAGAAGGTT GTGCAGATCT 
    TGGATCCTGC ACTGGAGGGT CAATATTCAT TGAAAGATGC TGTCCAAGTG 
    GCTGCCATTG CTGCCATGTG TGTTCAACAA GAGGCTGACT ACAGGCCACT 
    AATGGCTGAT GTGGTTCAAT CGTTGGTTCC GCTTGTCAAG AATCGTTCTA 
    CTCCAAAGAC GTGCAACCCT AGTGTCCAAG CGTAGAAGCC ACTTGAAGGG 
    GAAGTTGAAT GCTCAGTTTC CAGGTGCATG TCAAGTTTCC AACAGCAAAC 
    TATTGTGACG GGTTGCAATT TGAGACATTG TTTATGTTCT CTCTTTTATA 
    TATTGAGAGG GGAGGGCCAC ATGATTAATG TCGTTGATGA CCCAAGGAAG 
    ATTTGTTGAT AGTGCATCAT ATTTTTGGCC TTTTGTAATT TATCGTACAA 
    GCATCAGAAA CTGCAATGGA CGGTTGATCG GTTAGTTGTT AACTATTACT 
    CCGTATGAAT TATGATTGCT C

    Gene models with high sequence identity

    1. AT3G58690.1 [+] show detail - Protein kinase superfamily protein
      E-value: 4e-131; Score: 465.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 5.9e-153
    superfamily Protein kinase-like domain 2.2e-77
    HMMPfam Serine/threonine-protein kinase-like domain 3.7e-43
    Gene3D no description 5.9e-20
    Gene3D no description 2e-49
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 3.4e-27
    HMMSmart Tyrosine-protein kinase, catalytic domain 4.2e-22
    ProfileScan Protein kinase, catalytic domain 37.997

    See the detailed result >

    AT3G58690.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G54820.1); Has 119556 Blast hits to 118228 proteins in 3954 species: Archae - 119; Bacteria - 14059; Metazoa - 43160; Fungi - 10190; Plants - 33928; Viruses - 396; Other Eukaryotes - 17704 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR