K36919

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36919

Determination of introduced cDNA(s)

J023070N03 - Rice Full-length cDNAs - Original: J023070N03

full reading [+] show sequence

GGGACTTTGC CCTTTCCCTT CTTCCGACGG ACGAGCGGCG AGCTAGGCTT 
TGGCTCTGCC TCTGGTTCTG GCCATTCCCT TCCTCCCGCC GCACGCATCC 
TCTGATCCTC CCTCCCTCCC TCCCTCCTCG ATCCACGCGC GGTCCGAGCT 
TGGTACATCA CCTTCTTGAG GTTAAGATGT TGGGGCGCGC AATACGCAGT 
ATGGAGGTTA TGGTGCATTC TTCAACCTTC CTTCTTCCAA AGTTGCATCA 
GCCTGCCAAC TCTCCAGCAA AGAAGTATGC TCTAGTTGTT CTTAATCAGA 
ACCTTCCACG ATTCGTGCCC CGCCTGTGGA CTCATGCAAA GCTAAGAATC 
TGTGCTGATG GAGGTGCCAA TCGTATATTC GATGAGATGT TTCAGATGAC 
TAATGATCCA GACTATGAAA GCACCCGAAA AAGGTATATT CCAGAAATAA 
TTGAGGGAGA TATGGATTCT ATAAGGCCAG AAGTGAAACA GTTCTACTCT 
AGCCAGGGAT CTAAAATTTC TGATAAATCA CATAACCAAG AGACAACAGA 
TTTGCACAAG TGTATTTCTC GGATCCATCG TTGTACACCT GATCATGAAA 
AAACAAATCT TTGTGTTCTT GTGACTGGAG CACTTGGTGG AAGGTTTGAT 
CATGAGGCTG CTAATATCAA CATTCTGTAT TTGTTCTCGG ACATGAGGAT 
TGTTCTTCTA TCAGATGACT GCTTGATTCG GCTTCTTCCC AAAACACACA 
AGCATGAGAT CTATATTGAG TCATCTGTTG AAGGGCCACA TTGTGGACTT 
TTTCCTGTTG GAGCACCATC TGGAAGCACT ACAACCACTG GCCTGAAGTG 
GAACTTGAGT GAAGCGAAGA TGAGATTTGG GAGTATGATA AGCACATCCA 
ACATTGTTCA CGCAGAAAAG GTTACTGTAC AATCCGATGC AGATCTTCTC 
TGGACAATTT CCCTCCGAAA TCTGACCTGA AGAGCCACCT CCACTTTGCA 
CCCTTCGCCA GTTTTCCCCT TCTCTGGCAT ATCTTGGTGT TGTGTGTAAT 
CAGCCTAGAT CCTGTACAGC TGTTTATGAG TTCAAAGGCA GTTCTGCTTC 
TGCATCGGCC AAATAATTTT CCCTGCTTCA TGATAAAGCA ATTCATGATG 
CTCATGAGGT TAGAAACTTT TAAGGAGGAG CTGCCAGTGG ATTGCATGAA 
CACCACAGGC AGATGTATGA TGTAATTCCT TTATTGGTTT GTTTCTGTGG 
GATCGGATGA GCATATGATC CCTGCAATAC CTCTCTTCCG ATTGGCACTG 
CGTACTCTGC ACATATAACT TGCTGAAGAG AAGGATTCTT GCATTTATGC 
CCGCCTAAGA CGGGGGAAAA GAAATATGTT TGCCTTCTCT TCTAGCCGGA 
TTTTTTATTT CTTGTTTTCA GACATTAGTA TGTTTTGCAT TGTCTCGTCT 
ATCCATATTA CAGATTACAT CAAGTGTGTA AAAAAGACGG ATCAGAGATG 
AACTGATTTT TGTCAGGTCT GGACAGCATG CAGAATAGTC CACTCCGTTC 
ATTCCAGCTA CCGGTGGCGG AGCCAGAAAT TTTTTTAGCC TGGGCAAGCC 
TAACAAGAGA TAAAAACTAT ATATAGAAAA TTGTACAGTT TATCATAGAC 
AAAAGTAAAG TTGATTGTTG CCAAGTT

Gene models with high sequence identity

AT1G02880.3 [+] show detail - thiamin pyrophosphokinase1
E-value: 8e-91; Score: 331.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	THIAMIN PYROPHOSPHOKINASE	1.9e-67
HMMPanther	THIAMIN PYROPHOSPHOKINASE	1.9e-67
superfamily	Thiamin pyrophosphokinase, catalytic domain	7.9e-53
superfamily	Thiamin pyrophosphokinase, vitamin B1-binding domain	5.9e-27
HMMPfam	Thiamin pyrophosphokinase, catalytic domain	2.1e-28
HMMPfam	TPK_B1_binding	7.1e-21
HMMPIR	Thiamin pyrophosphokinase, eukaryotic	6.8e-125
HMMTigr	Thiamin pyrophosphokinase	2.6e-44
Gene3D	Thiamin pyrophosphokinase, catalytic domain	2.8e-41

See the detailed result >

AT1G02880.3

Model type: Protein coding
Short Description: thiamin pyrophosphokinase1
Curator Summary: Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine.
Computational Description: thiamin pyrophosphokinase1 (TPK1); FUNCTIONS IN: thiamin diphosphokinase activity; INVOLVED IN: thiamin metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Thiamin pyrophosphokinase, vitamin B1-binding domain (InterPro:IPR007373), Thiamin pyrophosphokinase, eukaryotic (InterPro:IPR016966), Thiamin pyrophosphokinase (InterPro:IPR006282), Thiamin pyrophosphokinase, catalytic domain (InterPro:IPR007371); BEST Arabidopsis thaliana protein match is: thiamin pyrophosphokinase 2 (TAIR:AT2G44750.2); Has 1298 Blast hits to 1296 proteins in 527 species: Archae - 0; Bacteria - 670; Metazoa - 134; Fungi - 134; Plants - 93; Viruses - 0; Other Eukaryotes - 267 (source: NCBI BLink).
Link: InterPro Scan - TAIR