K36938

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36938

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36938

Determination of introduced cDNA(s)

  • J013033N12 - Rice Full-length cDNAs - Original: J013033N12

    full reading [+] show sequence

    Nucleotide sequence: J013033N12 - full reading 
    GATTTTGAGC ATATTGCAGC ACAAAAAGTA GAGTTTCGAT AAGATGCTTC 
    AGGTTTCGAT CAGATCAAAC ACATCGCTAT GTTTCACGTT TCAATCGCGG 
    AATGTTGCCA AATTAATTTG GTCTATGGGG AGCTGAGATG AAAACAGTGC 
    GCTATTTTGG CTAGTCGTTG CCATCAGAGG ATAGGGCAGA ATTTGGATCA 
    TCTACAGAAG TGCGAGATCA CGCTTAGAAA AGGAGAATTT GGATACATGC 
    TTGAACAAAG CTATTTTTTT TAGCTTGATT TGGTGTCCGA AAATTTTGAC 
    TTTTTTTTTG TGTGTGTGTG TGTGCGCGGG GCAGTGGTTA CAATTTGCTG 
    AGGGATCCTC GCTACAACAA GGGGCTTGCC TTCAACGAAA GGGAGCGCGA 
    AACGCACTAC CTCCGTGGGC TTCTGCCACC AGCAATCGTA TCCCAGGAGC 
    TCCAGGAAAG GAAAATCATG CATAACATCC GACAATACCA GCTGCCTCTG 
    CAGAAATACA TGGCTATGAT GGACCTCCAG GAGGGGAATG AGAGGCTTTT 
    CTACAAGCTC CTCATTGACA ATGTTGAGGA GCTACTTCCT GTCGTTTACA 
    CTCCAACAGT TGGTGAGGCC TGCCAAAAGT ATGGATCCAT ATTTAGCCGT 
    CCTCAGGGTC TTTATATCAG CTTGAAGGAG AAGGGAAAGA TCCTTGAGGT 
    GCTAAAAAAC TGGCCAGAGA GGAGCATTCA GGTTATCGTT GTTACTGATG 
    GTGAGCGAAT TTTGGGGCTT GGAGATCTTG GCTGCCAGGG AATGGGGATC 
    CCTGTTGGTA AGCTTGCCCT TTACACTGCT CTAGGAGGAG TGCGTCCATC 
    TGCTTGTTTG CCAATCACAT TGGATGTTGG TACAAATAAC GAGGCGCTGC 
    TGAATGATGA GTTCTACATT GGCTTAAGAC AAAAGAGGGC CACTGCTCAG 
    GAGTATGCTG ATTTTCTTCA TGAATTCATG ACTGCCGTGA AACAAAACTA 
    TGGGGAGAAA GTACTCATTC AGTTTGAGGA TTTTGCAAAC CATAATGCAT 
    TTGAACTCCT TGCAAAATAT GGAACAACTC ACCTTGTATT CAATGATGAT 
    ATTCAGGGAA CAGCTTCCGT GGTCCTTTCT GGGCTTGTTG CAGCACTAAA 
    ATTAGTTGGT GGTTCATTGT CGGAGCACAG TTACCTGTTC CTGGGAGCTG 
    GAGAGGCTGG GACAGGCATT GCAGAACTTA TAGCTCTCGA GATATCAAGA 
    CAGACCAAAG CACCAATTGA GGAGTGCCGC AAGAAAATAT GGCTTGTTGA 
    TTCAAAGGGC TTGATTGTCA GTTCACGAAA GGAGACCCTT CAACACTTCA 
    AGAAACCATG GGCCCATGAG CATGAACCTG TTGGAAATCT CTTAGATGCA 
    GTCAAAACTA TCAAACCAAC AGTATTGATT GGCACATCTG GAAAGGGGCA 
    AACTTTCACT CAGGAGGTTG TTGAAGCTAT TTCCTCATTT AATGAGAGGC 
    CTGTCATTTT TGCCTTGTCC AACCCAACAT CTCAGTCTGA GTGCACCGCT 
    GAACAAGCGT ACACATGGAG CAAGGGCCGC GCGGTGTTTG CAAGTGGAAG 
    TCCATTTGAT CCGGTGGAGT ATGATGGCAA AATATACGTG CCTGGCCAGG 
    CAAACAACGC CTACATCTTC CCAGGGTTTG GCCTTGGTGT GGTGATGTCT 
    GGTGCAATCC GTGTTCATGA TGACATGCTT CTTGCAGCTT CGGAAGCACT 
    GGCTCAGCAG GTCACACAAG AGAATTTCGA CAAGGGCCTT ACTTATCCTC 
    CCTTCTCAAA CATCAGAAAG ATCTCTGCCC ACATTGCAGC CAACGTTGCA 
    GCAAAGGCAT ATGAACTTGG TTTGGCAAGC AGGCGCCCTC GGCCAAAGGA 
    CCTGGTTAAG TATGCAGAGA GCTGCATGTA CAGCCCACTT TACCGCAACT 
    ACCGGTGAAT CTGGTCATCC GGTATCCGGA TCTATTCCAG TCATGTATAT 
    CTATGAACTG TTTCCTGCAA AATCTTACTA CTTGTTCAGT ACTGCACGCT 
    GTAATTCTGA TGAGTCTACC GGAGTTACTT CAAGCCTTTT TTTCCCCGTG 
    TCGTTCATGC CTGTATTGTA ATATTTCCTT TTCGACGTGA TGTGAAGTTC 
    CTTGTATCCA GTTACCTTAA GCATGGGCAT ATGTATTTTC ATCACAAGAA 
    TGTTACCGTC CTAGGGATGG GTAATAAATG ATAAATCTGG AATAAAGTTT 
    CT

    Gene models with high sequence identity

    1. AT1G79750.1 [+] show detail - NADP-malic enzyme 4
      E-value: 0; Score: 912.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Malic enzyme, NAD-binding 1.1e-90
    HMMPfam Malic enzyme, N-terminal 8.9e-78
    Gene3D NAD(P)-binding domain 8.7e-93
    superfamily NAD(P)-binding domain 3e-106
    superfamily Aminoacid dehydrogenase-like, N-terminal doma 3.9e-101
    HMMPanther MALIC ENZYME 0
    HMMPanther MALIC ENZYME-RELATED 0
    FPrintScan Malic oxidoreductase 1.2e-85
    FPrintScan Malic oxidoreductase 1.2e-85
    FPrintScan Malic oxidoreductase 1.2e-85
    FPrintScan Malic oxidoreductase 1.2e-85
    FPrintScan Malic oxidoreductase 1.2e-85
    FPrintScan Malic oxidoreductase 1.2e-85
    FPrintScan Malic oxidoreductase 1.2e-85
    PatternScan Malic enzyme, conserved site 0

    See the detailed result >

    AT1G79750.1

    Model type
    Protein coding
    Short Description
    NADP-malic enzyme 4
    Curator Summary
    The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed.
    Computational Description
    NADP-malic enzyme 4 (NADP-ME4); CONTAINS InterPro DOMAIN/s: Malic enzyme, NAD-binding (InterPro:IPR012302), Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NADP-malic enzyme 3 (TAIR:AT5G25880.1); Has 9573 Blast hits to 9553 proteins in 2441 species: Archae - 143; Bacteria - 6332; Metazoa - 610; Fungi - 220; Plants - 473; Viruses - 0; Other Eukaryotes - 1795 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR