K37001

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37001

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37001

Determination of introduced cDNA(s)

  • J013002A21 - Rice Full-length cDNAs - Original: J013002A21

    full reading [+] show sequence

    Nucleotide sequence: J013002A21 - full reading 
    GGGAGTACCA AAATTCCCCA GTAGCAGCCG CCGCCGCCGC CGCCGCCGAT 
    TCACCAACCC TTCTCCTCCA TCGGCATGTC GCGGGGGGGA GGCCGGCTGC 
    CCCCGCGCTT CTCTCTACCC AGCTGTACCT GTACCTGAAT GCTTCTATCA 
    TGCGAGTGAA CTGATATAGG ACGAAGGGTC AGGAGGCGTT GGGATTTGTA 
    CTGCTCCATC AAGCATCTGC ATCACCTTAT GCATTGTTGG CCGCATCGAT 
    GGCTCCTCCT GGAGGCACCA CAGTGCCACA GCAACGAAGC GCTCCACCTT 
    TTTTATGTTG AAGATTGCCT CGTCATCGCT CGCCACCACA CACAAGCTCA 
    AGCAGGATCA CTCCAAAGCT ATAAACGTCG ACCTTAGAAG TAATCCCTAT 
    GTTCTTGAAC CACTCAGGTG CAACATATCC TCGAGTACCC CGAATGCCGG 
    TGTTTGTTTG TGTCTGATTC ACCGGAAGAA GCTTTGCTAG ACCAAAATCT 
    GAAATCTTTG CTACAAAAAT TATCATCGAG AAGGATATTC TGTGGTTTCA 
    TATCGCAGTG GATGATTTGT TTATTACACT CCTCATGTAG GTAGAACAGT 
    CCTCGTGAAA CCCCAAGTGC TACTTGAACA CGGAGGCTCC AATGCGGATG 
    ACTATCGTTG AAGAGGAATG TATTGAGTGA GCCATTGCTC ATGAACTCAT 
    ACACTAGCAG CTTTTCAGTT CCCTCATTGC AAAAACCAAG CAGTCTAACT 
    AAGTTCCTGT GAAACGTCTG CCCAATGGTT TGGACTTCCA CCAAGAACTC 
    CTTTTGTGCT TCCTGCTGAA GCTTTTCGAT TTTCTTGACT GCGATGTTAG 
    TTCCACACTC ATCTTGCAGC TGTCCTTTGT AGACAATACC TGAGGCTCCT 
    GTACCAAGTA CCTCATGGAA ACCACCGGTT GCCTTTTCCA GCTCTCTGTA 
    AGTGAAAATC TTTGAAGGTA ATCCAGAATT ACTGGGTAGT TGCGATAACT 
    GGGTTTTCTT CCTCGAGGTG ATACTACAAT AAGTACCAAA AAGCAGAACA 
    AAGATTAGGA GAAAGTTCAC CAATACAGAG CTTCCAAAAA ACAATGAGCT 
    CCCAAGAATC CAATACTTTT TGTCCTTCTT CCATTTGCTG GAGCCGCTGC 
    TGATCATGGA TGGTGAATTG GTGCTCCTAG GCACCTTAAG AAGAACTGTC 
    GCCTGTAAAC TGGAATCCAT ATTCCCATTT GATAAAGGGA GCTTCTTTTT 
    ATAACAAGTG TTTGAGGGTT TATTGAACAC GGCAACGGAG CAGAAGCAAT 
    CAATGACGCA CAGCCTTCGG CATTCGGTCT CATCTATCGG GCTGTACTGC 
    TCGTAGTCAG ATAGAGGCCA ATTAATGCGA TCAATTGGTG TCATCTCATA 
    CTGCACCATT GCTGCTGTCT CATCTAGATC ACAGCTTTGT GGCTCAAAAT 
    CTGGCCTGCA ACCTTTGTAT GTCCTCTCAT TGTCGAAGAA CTTGTACCTC 
    TGTGGGCATA GACAATTTGT TGTGTTCTTG GTGCCATCAA AGGTACAGTA 
    ACTGTTGAAG CCGCATGCAC CACTGCCTAC CTTTGTTTGA ATTGTCTGGC 
    AGATGTTCTC CGGAAGTGCA TCCACCGCTC TCCATTGCTC TTGCCATAAG 
    CTCCTGGCCT GTTTGCTCTT TGGGTAAATA TATTGCCGGA ACACACCATC 
    TGTATCAAGG GTTGCACGGT GGAAGAAATC ACCCATAGAG TCCACTCCTG 
    CAGAAGTGAT GTTTATCTGT GAACCATTAG TCAGCGTGAA GTATATCCTT 
    CCAGTTTCAT TGAACACCAG CTGTGAGCCA TTCCCCACTG TGTTACTGGC 
    CCAGTATGGA TCATGGTAGT ATGCAGAAGG TACAGCAACT AGATACAGCA 
    CAAGATTACC GTCATCTTGA ACATTTAGTT GAAACCGGCC ATTGGAATAG 
    TCTGTGGCGA GGAGACGGCT GTGGAGTGCT GTCCCTAGTG GGAGCACTTG 
    TGTGGGTAGG ATGGTATCAG AAGGGTCACC AAAGGACTCC CACTTTGTTG 
    CGCCATCAGT GCCTAAAAGC CTGAAATTAC CGGTGTCGAG CATTCTAGCA 
    TAGCCCACAT CAGTGACTCG TGGATTCCAT ACCTCGTTGC CAGATGGATC 
    GCGAAGAGAG AGTGCTCCAT CAGCGAGCTT GAGGATAGAG CCAGCTTGGA 
    CTTGTATCGG TATTGTATCA TCTTGCCTAT TGGAGCTAGT CTTGGCATAC 
    CAGATGACGG TCTTGTCAGC GATCTTGTTG AACCAGACAG CGAGCAGGTA 
    TGAGGAGGAG TTTCCATCTA CCGCCAGAAA ACCGAATGCA AAATCAGCAG 
    TGGGCGAGAT CCATGAGTTG TTTATCCCCT GGGGTGTCAA AGAGGAGCCT 
    ATGCTGATGT TTAGCTGGGC TTGGGCAGAT TTGGTGCAGT ATAGTAGCAA 
    GAGTTGCAGG ATGGGCAAGA ACAGGAGAGG TGCCATTGCT ATTGATCAAC 
    CTTTTGCTCG TACTAGATGA CAACAAAACT TATAGCCCTT GGAGAGCGGC 
    ATTTGTTAGT CTTGATCACT TCCATACTTG ACTAACCAAA AGTTTCTCTG 
    CGAGGCAACC GGTTGAACCT GTCAAATGCA ATTACAAAGC TGTCAATATG 
    ATAGACATAA GAGGGAGATT GGTTCACATT TCCTTATCAA AACTATAGAA 
    AATATCGGCT TTGAATGCAT TGACCACCTG TATGGAGAGA GAAAGAAAGA 
    CGTGTTCAGA AGTCTTTAGA GAAAGAAATA CGTGTTCAGA AGTCTTTCTA 
    TGTGTTTCTT TCCTCCTGAG GTTGGTCTTT CCAACCGCGT TTCAGAAGAA 
    CAGTTTTGGC CAGCTTGTAT GGTTATGGTC AAGCCAGGTG TAATCTTTTC 
    ATGGTAATAT AGGAGTACAC TGTAACATTA ATTG

    Gene models with high sequence identity

    1. AT3G07070.1 [+] show detail - Protein kinase superfamily protein
      E-value: 3e-48; Score: 41.60

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 3.1e-19
    superfamily Protein kinase-like domain 7.2e-42
    superfamily Curculin-like (mannose-binding) lectin 2.4e-22
    superfamily Curculin-like (mannose-binding) lectin 0.011
    HMMSmart Curculin-like (mannose-binding) lectin 0.00039
    HMMSmart Serine/threonine-protein kinase domain 0.00011
    HMMSmart Tyrosine-protein kinase, catalytic domain 1e-05
    Gene3D no description 6.2e-16
    Gene3D no description 5.5e-19
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPfam Serine/threonine-protein kinase-like domain 9.9e-17
    HMMPfam Serine-threonine/tyrosine-protein kinase 2.7e-24
    HMMPfam Curculin-like (mannose-binding) lectin 2.9e-13
    HMMPanther RECEPTOR PROTEIN KINASE ZMPK1 6.4e-15
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 6.4e-15
    HMMPanther RECEPTOR PROTEIN KINASE ZMPK1 4.6e-73
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 4.6e-73
    HMMPanther RECEPTOR PROTEIN KINASE ZMPK1 5.2e-34
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 5.2e-34
    ProfileScan Protein kinase, catalytic domain 16.047
    ProfileScan Protein kinase, catalytic domain 21.149
    ProfileScan Curculin-like (mannose-binding) lectin 8.617

    See the detailed result >

    AT3G07070.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G24790.1); Has 117663 Blast hits to 116291 proteins in 4377 species: Archae - 107; Bacteria - 13587; Metazoa - 43815; Fungi - 9836; Plants - 33095; Viruses - 347; Other Eukaryotes - 16876 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR