K37225

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37225

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37225

Determination of introduced cDNA(s)

J023035A18 - Rice Full-length cDNAs - Original: J023035A18

full reading [+] show sequence

GGCTCCTCCT CACATCGCCA GCTCGTCCGC TTGCCCCGCA CCGCAACCGC 
GGCGCGGAGG AGGAGAGCTC TCGCGCCGCG CGTGCGCGCG CGCGTGCGGG 
CGTGCGCGGG CGATCGAATC CGATCGCCAT GACCGGCGCC GACGAGCCGT 
CCATCACCCG CTGGACCTTC GAGGACTTCG AGGTCTGCTA CGAGGTGCGC 
CTCGGCATCC GCCGCGAGCC CGGGGGAGAT GAAGACGGCG ACGGCGACGG 
CGGCGGAGGT CGCGGCTACG CGCCGCTTGG ATCCGGCTCC GCGGGCAGCA 
CCCGCCCCTC CGCGGCGCAC GCCAACGGCG GCGCCGACCT GGCCGTCTTC 
GAGCAGTTCG AGCGGCTGGA GAGGAAGGTG GAGCTGCGGA ATGGAGCAAT 
TGAAGCTGGG CCTCCGCAGA AATCCCTACT TCCTTCTTTT GAATCTGCAG 
AAATGCGCAA TTTAGCTGAG ACATTGTTGA GGGATATCAT TCGTGGGAGT 
CCAGATGTCA AATGGGAAAG CATTAAAGGT TTGGAGAATG CAAAGCGTCT 
TCTGAAAGAA GCAGTTGTGA TGCCTATAAA ATACCCCAAG TACTTCAAAG 
GTCTGCTATC ACCTTGGAAA GGTATATTGC TTTTTGGTCC ACCAGGAACA 
GGAAAGACAA TGCTAGCAAA AGCTGTGGCT ACTGAGTGCA AAACAACCTT 
CTTCAATATT TCAGCCTCAT CAATTGTCAG TAAATGGCGT GGTGATTCGG 
AGAAACTAGT GAAAGTCTTA TTTGAGCTTG CAAGGCATCA TGCACCATCC 
ACCATTTTTC TCGATGAGAT TGATGCTATT ATTAGCCAAC GTGGTGAAGC 
TCGTAGTGAA CATGAAGCCA GTCGGCGATT GAAGACTGAG CTATTAATAC 
AGATGGATGG GTTAACTAAG ACAGATGATC TCGTTTTTGT TCTAGCCGCC 
ACAAATTTGC CATGGGAACT GGATGCAGCA ATGTTGCGCC GTTTGGAGAA 
ACGTATTCTT GTTCCCTTAC CAGAGCAAGA AGCTAGACAT GCCATGTTTG 
AAGAGCTCTT GCCATCTGTT CCTGGCACAA TGAATATCCC ATATGATGTT 
CTTGTGGAGA AAACTGAAGG ATATTCAGGC TCTGATATAC GCCTTGTGTG 
CAAGGAGGCG GCAATGCAAC CCCTTAGAAG GTTAATGTCG GTTCTTGAAG 
GAAGGCAAGA AGAAGTGCCT GAGGATGAGT TGCCTGAAGT TGGTCCAGTA 
ACGACAGAAG ACATTGAGCT TGCACTAAGG AATACACGGC CATCTGCTCA 
TCTTCATGTA CATAGATACG AAAAATTCAA TCAAGACTAT GGCAGTCATG 
TCCTCAGCTA AAGGTGAGTT GCAAAAGCAA AGGTTATTTG CACAACATAG 
ATTGCTGAAT TTCCTCCTTG AAGCTTGAAC TGTTCCCTAG TATTGTGGAA 
ATCCTCCTGA CGGAATCTTG CCGATAAGAC TTTTCATTTG CACCTAGTAT 
GGTTGATAGA ATGCTGAATT ACCGCTGATG TATTTACAAC TAATGAGCAT 
TCTCTTTACA CAATATTTGT TCCTGTACCA TGTATATTAT CATTTGTTTG 
ACGGATAATA AGCTATTTGG GTAATCCTTG CCCTTTCGGA ATATGAGAGA 
AACATTGTAC ATTTGTACTG GGTACC

Gene models with high sequence identity

AT2G34560.2 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
E-value: 2e-151; Score: 533.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	ATPase, AAA-type, core	3.4e-40
HMMPanther	KATANIN-RELATED	3.8e-178
HMMPanther	AAA ATPASE	3.8e-178
HMMSmart	ATPase, AAA+ type, core	1.7e-19
Gene3D	no description	1.3e-52
Gene3D	no description	2.5e-12
superfamily	P-loop containing nucleoside triphosphate hyd	4.8e-59

See the detailed result >

AT2G34560.2

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR