K37516

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37516

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37516

Determination of introduced cDNA(s)

  • J023075O16 - Rice Full-length cDNAs - Original: J023075O16

    full reading [+] show sequence

    Nucleotide sequence: J023075O16 - full reading 
    GCTCGCAGCT CAAAAACCCT AGCCGCCACT CCGCCATTTC GGTAAGGTTT 
    GCTGCGACTC CGCCGCGACG CATCTTGCGC CGCCAGCCGC CGCCGCCGCG 
    CGCCTCCTCC CCCGTCGACC TCGGCTGACG CGCGGCGCCC TCGAGCTCGC 
    GTCGCGTCGC GTCGTGTCCC TCTCGTTGAT GGAGGCTCCG GCAAATAGCG 
    TGGCAGTGGC TGATGGGAAC CCAAAGACAG CGACAGAGAC TCCGCGGGTG 
    GAGGATTACA AGGACGCTGC CATGTACTAT GGAACGTACC CGGCTTATCT 
    CTATGGAGCC TATGGTGGCT GGGGGGAGTA CTCCACATAC CTGAGCCATG 
    ATGGTGCAGA GACACCAACT GCTGGTGCTT ATGGGGATAT GTACTATGGC 
    TATTCTCCAT ATGGTTATTC AACTTCAGGA CATGATAGTC AGATGTATGG 
    ATCTCAGCAT TACCAGTACC AACCGACATA CAACAAACAA CAGAATACCA 
    CTGGCAAGCC TTCCAACAAT GGAAAAACTG AAAATCCGGC TGCACTGCCC 
    CAAGGGGATG TCTCTGCTAA TGGTGTTGAT AGTCTGAAAG GTCAGAAAAA 
    GACGAATCTG CTCCCGAAGG CAAGCCAGAA TACACCAGGT TCCAACGGTT 
    CCTATGGCCG ACCTAGTGGG CGTTTTGGTA ACTACCAGAA CCAAACTAAC 
    CGAACAACTT ATCCATGCTA CAGTAGTCAA ATCTTCAATG GCAAGCAGCA 
    AAAACTTCCC ACTGGCAATC GTTCTCTGAC AACTTCCAAT TCTAAAAGCA 
    AGGGACAGTC AAGGAATCAG AACACATATC CTCATCTCAT GGGTCTGCAG 
    ACACCTACTT CTCCGTTGGG ACCACCATCA ATTTACTCGG CTAGTGGAAT 
    GTATGGATAC AATGGGAGTT CATATGGGTC CGGCCTATGG TATGGATCAC 
    ACCTGTATGG TTCTGGATTG TACGGGGGAT GGAATGCACT GTCGGATGGC 
    AAATACAATC CCAGAGGAAG AGGTAATGGA TCCTATGGTT ATATCCATGG 
    AAATCAGGAT GGGTTTAATG AGCTAAGAAG AGGGCCAAGA AGTGGTCTTT 
    TCAATAACCA ACAGGGAGTT GGAGCTACTG TTGCACCTGT GAAGGGACAA 
    GAGCTTTCAG CCAGCGATAG CTCGCTTTCT GTCATGAAGG ATCAGTATAA 
    CCGGGCTGAT TTTGTGGAAA CATACTCAGA TGCTAAATTC TTCATCATCA 
    AATCATACAG TGAGGATGAT GTTCACAAGA GCATTAAGTA CAATGTTTGG 
    GCTAGCACAT CCAATGGTAA TAAAAGGCTT GATGCTGCTT ATCAGGAGGC 
    TAAGGAAAAA TCAAGTGATT CTTCTGTGTT CCTTCTTTTC TCTGTGAATG 
    CAAGTGGTCA GTTTGTTGGT CTTGCTGAGA TGGTGGGCCG TGTTGATTTT 
    AACAAGACAT TGGAACACTG GCAACAGGAC AAGTGGACTG GCTGTTTCCC 
    TGTAAAGTGG CATATTGTGA AGGATGTTCC AAACAGCTTA CTGAAACACA 
    TCATTCTTGA AAACAATGAG AACAAACCAG TCACAAATTG CAGAGATACT 
    CATGAGGTGA AACTTGAGCC AGGGCTTCAA GTGCTTAAGA TTTTCAAGGA 
    CCATGTCTGC AAGACGTCGT TACTGGATGA CTTTGATTTC TATGATAATC 
    GTGAGAAGAT GATGCAAGAG AGGAAGGCAA AGCATCAACA ACTGAAGAAG 
    GTCGTTGATG AGAAGCTGCT TAATGCTGTG GACACTGAGA ACAGCTTGTT 
    AACTGTGAAA TCCAAATTGC AGGAAACAGC TGAGGTAGAG ATTGATGTCT 
    TAAACAAAGA GCCTCATGGT AAAGCAGGAC GAGTTGATGG GAAAGAGAAC 
    GGTGTGTTGG CCGTTTCTGT AAATGGTGTT ACCCCAGAAG ATGTTCAGTT 
    GACAAACGAG AAGTTGGCCA GTTTGAGCGT CTGTTAAGTT TTTTCTCATC 
    ATTTCAGCCA TTGAGGGGTG GTGTAAGGTG AAGGGCTATA TAGGTTGGGA 
    AGGCAGCAAT CAAGGCAATT CAAGATCCAT TTGAGTTTCC TTGTGAGTTT 
    CTCCGTTGCT TTTGGTTAGG ACTTGGAGGT GGTTTCATAG GAGAGCTAGA 
    AGTTTAGCTG ATTGTGTCTG GTGAGATGTG CGGATAGCAG TAGAGGTTTT 
    TTGGACTTTT GGTTTTCAAT GATGGATCAT TGGTTTGCGC AGTTCCTTTT 
    CTTTTATATT CTGTTCTCTT TTGCGTTGGG CAGGTGTAGC TTTTTTTAGT 
    ATGTTTGGTG TCTGAACCTG AAAGCATGTC AAGAGTGTTT AAACCTGGGA 
    ATTCAATTAA GAAATTTACT CTTTTGTTCC AATGCTTATT TTCTGATATT 
    GCTTTG

    Gene models with high sequence identity

    1. AT5G61020.2 [+] show detail - evolutionarily conserved C-terminal region 3
      E-value: 1e-87; Score: 321.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan YTH domain 49.98
    HMMPfam YTH domain 9.8e-26
    HMMPanther YTH DOMAIN-CONTAINING 2e-104
    HMMPanther YTH domain 2e-104

    See the detailed result >

    AT5G61020.2

    Model type
    Protein coding
    Short Description
    evolutionarily conserved C-terminal region 3
    Computational Description
    evolutionarily conserved C-terminal region 3 (ECT3); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1); Has 1114 Blast hits to 1097 proteins in 185 species: Archae - 0; Bacteria - 6; Metazoa - 492; Fungi - 144; Plants - 353; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR