K37536

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37536

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37536

Determination of introduced cDNA(s)

  • J023132A12 - Rice Full-length cDNAs - Original: J023132A12

    full reading [+] show sequence

    Nucleotide sequence: J023132A12 - full reading 
    GACCTCCTCC CCCTCCACGC CATCCCCGAC ACCGATCGAG AGAGAGAGAT 
    CGCACCGATC GACGTACGGT ACGAGACGAC CATGGCGCGT CCTCGCTTCG 
    CCACCACGGC GCCATTGTTG GCGCTCGCCG TCCTCGCCGC CGTGGTGTCC 
    GTCGCCGTCG CCACCGCTCC CGCCGGCAAG GACCCCGGCG GCTTCGTCGT 
    CACCGGGCGC GTCTACTGCG ACCCCTGCCG CGCCGGCTTC GAGACCAACG 
    TCTCCAAAAG CATCCCAGGG GCGACGGTGT CGGTGGAGTG CAGGCACTAC 
    GGGGCGGGGA GGGAGAGCCT GAAGGCGGAG GCGACGACGG ACGAGAAGGG 
    GTGGTACAAG GTGGAGATCG ACCAGGACCA CCAGGAGGAG ATCTGCGAGG 
    TGGTGCTGGA CAAGAGCAGC GACCCGGCGT GCTCCGAGAC GGAGAAGACC 
    CGCGACCGGT CCCGCGTCCC GCTCACCAGC AACAACGGCC TCAAGCAGAA 
    CGGCATCCGC TACGCCAACC CCATCGCCTT CTTCCGCAAG GAGCCCCTCG 
    CCGACTGCGG CTCCATCCTC CAGAAGTACG ACCTCAAGGA CGCCCCCGAG 
    ACCCCATGAT CATCATCATA TATATGTTTC TCCTTAGCAG TGCATCAAAC 
    GTTCCTTCAA ATTTGAGCCT CTCCGAAGCT CAAGATGGAG CCGCCGCCGC 
    CCGTGTAGAA GTAAATTAAT CTACGATTGC AGCATGCAAT AACGGAGTTT 
    ACATTGCCGA TCGATCTGTT TTGTACGTAC CTAAGTAATT TGGAGACGCT 
    GATGTGATTC TTTGTTCATT CATCAAGAGT CTTTGTGTGT GATTGTACCC 
    TCCTCCTCTT GTTGCTCTGT AATTACCTAC TCCACTATTA CTAAGTACTT 
    GTTGATCTGC GGGGGGCGCC TATATACATT GCTGTAACTG TGTGACACAC 
    ATTAATTACT CCATCCATTT CATACT

    Gene models with high sequence identity

    1. AT1G29140.1 [+] show detail - Pollen Ole e 1 allergen and extensin family protein
      E-value: 2e-25; Score: 113.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Allergen Ole e 1, conserved site 0
    HMMPfam Pollen Ole e 1 allergen/extensin 1.6e-22

    See the detailed result >

    AT1G29140.1

    Model type
    Protein coding
    Short Description
    Pollen Ole e 1 allergen and extensin family protein
    Computational Description
    Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT4G18596.1); Has 312 Blast hits to 312 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 312; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR