K37607

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37607

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37607

Determination of introduced cDNA(s)

  • J023105G21 - Rice Full-length cDNAs - Original: J023105G21

    full reading [+] show sequence

    Nucleotide sequence: J023105G21 - full reading 
    GACACATCAC ACGTTTCGCC TCCCTCCTCC GCTCGTCTTC TTCATTCTCT 
    CTCCTTCGCT TCGCTTCCAA ATCGCCCGCA ATTTCTCCCC CAAAAACCTC 
    CCCTCCCCCC ACCACCACCA TTAATAAACC CCTCCTCCTC CTCCTCTTCT 
    TCCTCCTCCG CCTCGCCATC TCACCGCCAC CGCCTCCTCA CTCACTCACT 
    TCCTGCCACG TCATTCGCGC CATCGATCGC GTCGTCGCCT CAGCTGCCTG 
    TAAGTGAGAG GAAGAGGAGG AGTAGAGCTC GTCGTCTCCG CCGCCGCAGC 
    TGGTGCTCGC TGTTGATTTA TGTCGCCTGC TCTACCCCCG TTTCTCCATG 
    GTTCTGAGCT CCAGTCGCCG CCAACGGTTT CTTCCTGCTC CCTTCTCATC 
    CTCCTCCTTC AAAATTGGTA TACGAGGGGC GCAAGAACAC AGCAAAATCC 
    CTTCACGATC TCCAGATTTG GATTTGGGGT GAAATACTTT GGCTTTCTTC 
    GTTTAGACTG GTGACAATTG AAGATAGCCC CCAAATTGCC TTAAGATTTG 
    GTTTGGCTTG AGTGGATCAA GTACAGAATC CGAACTTTTG CAACCTGACA 
    TTCTTCTAGT TCACAAAGTC GGCCAGATTT GAGATTTCTC TCGGACATCT 
    CTGTACACAC AGGAGCTCTC TTTTGCTCCA GTTTTAAACA GAAGTTGGAC 
    AAAGGCTCTG TTTCTGGTTT TTTGAGTTTC TGCGATAAGC TTAGAGAGCA 
    GACAACAAAC TTTTGTCCTG ATTCATCTAA ACTCTTACCT GACTGCAATC 
    AAGGCCAATT GTAATCCAAT AATCTCTGAT CTTGTTCTGG TTGCACGTTG 
    AGATGATGGT GCCCTCTTCA CGGAAAGTCC GTGTTTTCTG CTCTGATCCT 
    GATGCCACTG ACTCCTCTGA TGAAGATGAC CAGAATAAGA AGGAAAGGAG 
    ATTTTCAAGG GAAATACTAA TTCCAATGGA AAACTCCAAG GCATCCAAAC 
    CTGTTAAGAC CCTTGTTCAA TGTGGCACAA AGACTGTAAA GGATTCCGAG 
    AAGGAACCGA CGAGCAAATA CAGGGGTGTG CGCCGGCGGG CGTGGGGCAA 
    ATGGGCTGCA GAAATACGTG ACCCTGTGCG AAAATCAAGG AAATGGATTG 
    GCACATTTAA CAGTGAGGAG GAGGCCGCTG CGGCATATCT TGCACAATCA 
    AACCAGTTCC ATGAAGAGTT GATGGCCTTG AAAATCCAAT CTTCTGTATC 
    AGAGCAGGAA GATTTGTCAA GCTCTGTTAC TATATCCTGC GTGTCCTCAT 
    CTCAGTCATG TGACCAGAAG ATTCAGGCAA AGCCACAAGA ACACAAGAGA 
    GTGTCAGTGG TGGTTAACCG TGAGACCGTT GAGCAGAAGT TTAAGGCACA 
    GCCACAAGCT CAGAAGATTA AGGCACAGCC AGAAGTGCAG AAGAGAGTGT 
    CAGTGAAGAT TAGCCATGAG ACTGAGGATG AGCACTTGCT GAACTTGCCG 
    TCCACGCCTA AAGGCAAAGA GATTTCGATG GGCGCTGTTC TTGGCAGGAT 
    AGATGAGATT CCTGTGAGCA ACTGTGTGGG CCATATTGAT GAATTTCCAC 
    CTGATGATTT CACTAGGCTT GCAGATGCGT TCCCAGTTAG TGATTTTATC 
    GGCATGGCAG ATGTGCCACT GGGCGATGAT TACATTGGCC TTGCAGACAT 
    CAGCCACCTG CCGCTGCCTA TCACAGATCT GAAGTTCGAC CTCAATGCAG 
    AACTCAACTG GGACGGGTTC GACTTTGCTT CATTGGAACA AGAACTCAAC 
    TGTCTTTGAT GGCTTGAATC CTGTTCTATG TGAAAACCTC TTGTTGATTG 
    AATTGAGTGC AGGAGGTAGA TTCAGGTATC CATCTTTCAC ATTGCTGGCA 
    GGCCGAGTGT ATGATCTGGA GATTTTCATC TCCAATTTTG CCGGAAAATT 
    GTACAGTCCC CCTACGGCAA ACAAATGAGT ACCGCAGTAT TTATGTATAT 
    GTTCACCAAT CTCAAAAATG TTAATGAGAT TGTGGTGACA GACCGTCCTT 
    GATCTCAGTT TGGTTGTGTA TTTGTTGGAC GCCATTATTA TATTTGTTAA 
    TTTTGATATT GTTCTTGTGA TCC

    Gene models with high sequence identity

    1. AT1G68550.2 [+] show detail - Integrase-type DNA-binding superfamily protein
      E-value: 1e-14; Score: 79.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 2.5e-13
    superfamily DNA-binding, integrase-type 1.3e-18
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.3e-14
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.6e-08
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.6e-08
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 18.65
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 6.5e-15

    See the detailed result >

    AT1G68550.2

    Model type
    Protein coding
    Short Description
    Integrase-type DNA-binding superfamily protein
    Curator Summary
    encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
    Computational Description
    Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT3G25890.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR