K37642

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37642

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37642

Determination of introduced cDNA(s)

  • J023003B17 - Rice Full-length cDNAs - Original: J023003B17

    full reading [+] show sequence

    Nucleotide sequence: J023003B17 - full reading 
    GGCTGCCAGC ATTTTGATTC TGTGTGTGTG TCTTGGTTGC AAAAACCAAG 
    ACATACACAC AGAATCAAAT AATAACAAAG GTTTCCTAGC CTCAAAGGAT 
    ACATATATAT AGTTTCCCTA CAATACAATG GAGCCTGTCA ATGATTTCCA 
    GGAAGGCATT TCAACAGAGC ATGCCTTTGA GGCAGAGCCT GTGCCATCAT 
    TGTCGGAAAC AATGACGCCA CGATCAATGG TGGTGAGCTT CATCCTTAGT 
    GTAACTCTCA GCATCGTCGC CATGAAGGTC ACCTTGAGCT CTGGCTTCAT 
    TCCGTCGTTC AGCATCCCAG CCGGCCTCCT CGGTTTTTGT GTATCCCGTG 
    CGTCGATCCG CATTCTTGAC TACTTCGCAG TGGCACAACT ACCATTCACA 
    CGCCAAGAGA ACACCATCAT CCAGACCTGT GTCGTCGCAT GCACCTCGAT 
    CACATTCACC GGTGGCTTTG GGACATATAT TCTTGCAATG GGAAAGAAAG 
    CAGCTGTAGG GGATGTCAAT GCCCAAAATA ACGTTGAGGA GCCAAGCTTT 
    GCCAGGATGA TCACCTTCCT CTTCCTTATC AGCTTTGCTG GCATGTTCAT 
    CATCATGCCC TTCAGGAAGG TCATGATCAT TAGGCACCGG TTGACATTCC 
    CCAGCGGCAC AGCAACGGCG CACCTCATCA ATAGCTTCCA TACACCTCAA 
    GGTGTCAAGC AAGCAAGGAA GCAAGTGACA TTATTGTTTA AATCGTTTGG 
    AGGAACCATC GCATGGTCGC TCTTCCAGTG GTTCTTCGCC TCTGGGCCGG 
    GCTGTGGCTT CAAATTCTTC CCCACATTTG GCCTCGAGGC ATATAAACAC 
    GGATTCTTCT TCGATTTCAC CATGGCCAAT GTCGGCATTG GCATGATGTG 
    CCCGTACATG ATCGTGTTCT CCGTTTTCAT TGGCACCATC ATCTCGTGCG 
    GTGTAATTTG GCCGTACATC GAGTCAAAGG AGGGCATCTG GTACCCAAGC 
    AACCTTGGGC CCAACAGCCT TAACGGCATC AGAGGTTACA AGGTGTTCAT 
    CGGCTTGTCC ATGATAATGG CTGACTGCCT CTTCGTCTTC CTCTGCATCA 
    TGGTCCGGAC AACATGTGCC ATGATCAAGC GGCGTCGGCA GGCAATGCAA 
    GGTGGTGGCG GTAATGCGCA GCCATTCCAG GGTATCGACA TCGCCGATCA 
    GCCGGTGAAG AGCTTCGATG ATCGCCGCAG GGCGCAGGTG TTCCTCCGGG 
    ACGAGATACC GGACTCGGTC ACCATTGGCT GCTATGTCCT CCTGTCGATC 
    ATCTCCATCG CCGCCATCCC TCACCTCTAC CCACAGATGA GGTACAGCCA 
    TGTTGCGCTC ATCTACCTCG CCGCGCCCGT CTTCGCCTTC TGCAACGCCT 
    ACGGCTTCGG CGTCACCGAC ATGAACCTGG CTAGCACCTA TTGCAAGATC 
    GCCATGTTCG CGTTCGGCTC GTGGGTCGGC ATCAAGAGCG GCGGCGTGGT 
    CGCCGCCCTG GTCGCCGGCG GGATCACCAT GTCGATCCTG GGCAACGCGG 
    CCGACGTCGC GCAGGACCTC AAGACGGGCT ACCTGACGCT GACGTCGCCG 
    CGCGCCGTGT TCATCAGCGA GGCGATCGGC ACGGCGCTGG GATGCGTCGT 
    CAACCCCACC GTGTTCTGGG TGTTCTACAG GGTGTACAAG ATGGGCAGCG 
    GCGACATGGG CGACATGCCC TACGCCAAGC TCTACCGCGG CTTCGCCATG 
    CTCAGCGTCG GCGACGGCGA GCAAGGCCTG CCCAGGCACA GCATGCTCCT 
    CTTCAAGGTC TTCTTCGTGC TCGCCCTGGC GCTCAGCGTG TTCCGGGAGG 
    TGGCGAGCCG GAAGGAGTGG CGCATCCGGC GCTACATCCC GAGCACCATC 
    GGCATGGCCA TCACCTTCTT CATGCCGCCG CGCGTGCCCG TCGGCATGTG 
    CATCGGCAGC CTGGTGGCGT ACCTGTGGGA GAAGATGGAC GCCGGCCGCG 
    GGCGGATGCT CTCGCCGGCG CTGGCGTCGG GGCTCATCTG CGGCGACGGC 
    GTCGGCTCGA TCTTGCTGTC CATGCTGACA CTCATGGGTG CCAGGGCGCC 
    CATCTGCATC AAGTTCTTGT CTCGAGGTGA CAATGTCAAG TTGGACGCCT 
    TCTTGGCAAC ACTCCATGAC ATGAGATAGC TACTAGCTAG CTATCCATGT 
    AGGGAAACTA GATCATTTTC TCAGGTGTCA AAACTTTTGT ACATATGTAT 
    CCACGTCATA GGGGCTTGAG TTAGGAGTCG TGGCAAACTG TATAATCAAG 
    TTTCAGTTCA GTCTATAAAC ACAGTTTGAT CTCCTCT

    Gene models with high sequence identity

    1. AT1G48370.1 [+] show detail - YELLOW STRIPE like 8
      E-value: 4e-171; Score: 598.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Oligopeptide transporter OPT superfamily 5.4e-70
    HMMPfam Oligopeptide transporter OPT superfamily 1.8e-144

    See the detailed result >

    AT1G48370.1

    Model type
    Protein coding
    Short Description
    YELLOW STRIPE like 8
    Curator Summary
    Arabidopsis thaliana metal-nicotianamine transporter YSL4
    Computational Description
    YELLOW STRIPE like 8 (YSL8); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 5 (TAIR:AT3G17650.1); Has 1797 Blast hits to 1745 proteins in 565 species: Archae - 19; Bacteria - 910; Metazoa - 0; Fungi - 269; Plants - 459; Viruses - 1; Other Eukaryotes - 139 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR