K38011

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38011

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38011

Determination of introduced cDNA(s)

  • J023148G14 - Rice Full-length cDNAs - Original: J023148G14

    full reading [+] show sequence

    Nucleotide sequence: J023148G14 - full reading 
    GAGTGCGATG CACACACGCA GCCGTCGGCT TGGTTTCCCC CCCCTGAATC 
    CAAGTCACCT CCTCCTCACA CCTCACCTTC CCCCTCTCTC CTCCGATCGC 
    GCGCGCATGG CGATGTCACG AGCCGCCGCC GCTGCCGCGG GGACTCCCGT 
    GGCGCGGCGG CGATTGATGG GGGCCGTGGC GGCGAGGTCG ATGGCGTCGT 
    GGTTCGGCCA CGTGGAACCG GCCGCCAAGG ACCCCATCCT CGGCGTCACC 
    GAGGCGTTCC TCGCCGACCC CTCCCCGGAC AAAGTCAACG TCGGCGTCGG 
    CGCGTACCGG GACGACAGCG GGAAGCCCGT GGTGCTGGAG TGCGTGCGCG 
    AGGCGGAGCG GCGGATCGCC GGGAGCATGA ACATGGAGTA CCTTCCAATG 
    GGTGGAAGCA TAAAGATGAT TGAAGAATCA CTTAAACTGG CCTATGGGGA 
    GAACTGTGAG TTCATCAAGG ACAAGAGGAT CGCAGCAGTG CAGGCTCTTT 
    CAGGAACTGG TGCATGTCGC CTCTTTGCAG ATTTCCAGAA GCGTTTCTTG 
    CCAGATTCAC AGATTTATAT ACCCACACCT ACATGGGCCA ACCATCACAA 
    TATTTGGAGG GATGCCCAAG TACCACAAAA GACATTTACC TATTACCATC 
    CAGAGTCAAG AGGACTTGAC TTTGCAGGCC TAATGGATGA TATCAAGAAT 
    GCTCCAGATG GTTCATTCTT TTTGCTTCAT GCTTGTGCGC ATAATCCCAC 
    TGGAGTAGAT CCTTCAGAAG AACAATGGAG GGAGATATCT CATCAGTTCA 
    AGGTGAAGAA ACATTTTCCA TTCTTCGACA TGGCATACCA AGGATTTGCT 
    AGTGGTGATC CAGAGAGAGA TGCCAAGGCA ATTCGAATAT TTCTTGAAGA 
    TGGACATCAA ATTGGATGTG CACAGTCATA TGCGAAAAAC ATGGGACTTT 
    ATGGACAAAG AGCAGGATGC CTTAGTATTC TATGTGATGA TGAGATGCAA 
    GCAGTTGCTG TTAAGAGCCA GTTACAACAG ATTGCTAGAC CTTTGTACAG 
    CAACCCACCC GTTCATGGTG CATTAATTGT TTCAACTATT CTTGGTGATC 
    CGGAGTTGAA AAGTTTATGG CTGAAAGAGG TCAAGGGTAT GGCTGATCGT 
    ATCATTGGAA TGCGAACAGC ACTCAAAGAG AACCTTGAAA AGTTGGGTTC 
    ACCAATGTCA TGGGAACATA TCACTAATCA GATTGGAATG TTCTGCTACA 
    GTGGTATGAC ACCTGAACAA GTCGATCGCT TGACAAAAGA GTTCCATATC 
    TACATGACTC GTAACGGGCG GATAAGCATG GCTGGAGTAA CAACAGGAAA 
    TGTTGCCTAT CTGGCTAATG CTATTCATGA GGTTACCAAG ACAAAGTGAG 
    AGTGTTGGAG ACATTCCTAT CATCATTTTC AGTACCTTTT TACCGACCGC 
    AAAATGGGTC AAATGGTGAA ATAAAATTGT AGTCCGATAT GATGTGAAAT 
    AAAATGGCTG GTAAGCTAGA AAAGGGCAAG TTTATTTTTT GAGGACAAGA 
    CTTTTGCTGT ACCAGTGAAA ACATTTTTTA GGACAAGACT TTACAGTTAG 
    AACGAACGTT CTAACTGTGA CAGTGTCATG CTTTGTAAAG GAAGTGTACC 
    TTTCCACCGA TGGGCATTTT TGAT

    Gene models with high sequence identity

    1. AT2G30970.2 [+] show detail - aspartate aminotransferase 1
      E-value: 0; Score: 714.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Aminotransferases, class-I, pyridoxal-phosphate-binding site 0
    FPrintScan Aspartate/tyrosine aminotransferase 1.7e-36
    FPrintScan Aspartate/tyrosine aminotransferase 1.7e-36
    FPrintScan Aspartate/tyrosine aminotransferase 1.7e-36
    FPrintScan Aspartate/tyrosine aminotransferase 1.7e-36
    HMMPfam Aminotransferase, class I/II 6.9e-89
    HMMPanther Aspartate/other aminotransferase 6.8e-243
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 2 0.00035
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 4.7e-101
    superfamily Pyridoxal phosphate-dependent transferase, major domain 6e-112

    See the detailed result >

    AT2G30970.2

    Model type
    Protein coding
    Short Description
    aspartate aminotransferase 1
    Curator Summary
    ASPARTATE AMINOTRANSFERASE 1
    Computational Description
    aspartate aminotransferase 1 (ASP1); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity, copper ion binding; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase 2 (TAIR:AT5G19550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR