K38121

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38121

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38121

Determination of introduced cDNA(s)

  • J023108J06 - Rice Full-length cDNAs - Original: J023108J06

    full reading [+] show sequence

    Nucleotide sequence: J023108J06 - full reading 
    GGCCCTCTCT CTTCCTCGGC ACCGGCCGGC CGGAGCGAGA CGCCGCCAGC 
    CGCCGGCAAT GCCTACGCTG GTCGCCGCCG GCGGGATGAG AGCTACCGAG 
    CGCGCCCGCC ACCCGCGATC GAGCCACGGT CCCCGTCCGC ACCTGGACCA 
    CATCATGGCT AGGGCGATGT GCGCCCACGC CATGGAGGAG TCGACGGACA 
    CCATGGAGGG CATCATGCGC GTCGTCCTCA CCTGCCTCCC CACCCCGGCG 
    CCCTTCTCCA CATCCCACGG CTCCCTCTCT TCCTCGGCGG GCGGTGGCGG 
    CGGCAGCGGC GGCGGCGGCG ATGACCGCAT CAGCCGCCTT CCGGGCGCGC 
    TGCTCTCTAA CATCGTGTCC CGCCTCCCGG CCAGGGACGC GGCGCGCACC 
    GCCGTGCTCT CCACGCGCTG GCGCCGCGTC TGGGCGTCCA CGCCGCTGGT 
    CCTCGACGAC GTCGACCTCC TCGACATCCC CGACGAGGAC CTCCGGCGCG 
    GCCACTCCCA CCGCGTCGAC CTGGCCGCCG CCGCCTCCCG CGTGACCCGC 
    GTCCTCACCT CCCACCGGGG CCCCTACCTC TGCGTCCACC TCACCTGCTG 
    CAACATGGCC ACCCACTGGC CGATGCTCTC CTACTGGCTC AGCCTCCTCG 
    CCGCCAATGG CGTCCAGGAC CTCGTCTTCG CCAACCGCCC CTACCCGCTC 
    GACCTGCCCC TCCCCGTCGA TATCCTCCGC ATCCCTTCCC TCCGCAGCCT 
    CTACCTCGCG TTCTGGACCT TCCCGGGCAT CCCCGGCGGC GCGCGCGGCC 
    CCCACGTCTT CCCGCACCTC CGGGAGCTCG GCCTCTGCTT CATCAGCATC 
    GACGCCCAGG ACCTCGACGG CTTGCTCCAG TGCAGCCCCG TCCTGGAGAC 
    GCTCGCGCTC GTCTCCAACT CCTACTCCCC CGCTCACATC CGCGTGCGCA 
    GCCGCACCCT CCGCTGCGTG CTCTTCTGGA TGTCGCTGGC GCAGGAGATC 
    GCCTTGGTCG TCGCCCCGCG CCTCGACCGC CTCATCCTGT GGAAGACGTT 
    CATGGGTTTC CCCGGCGAAA TCTTTTGCCG CACAAGGGTC AAGATTGGTT 
    ACGCCACAGA GCTGCGAGTC CTGGGCTACT TGGAACCAAG AATGCACGAG 
    CTGGAGATCG GCAATACCAC CATCGAGGCT GGAACAAAGA TGAGTTCAGA 
    TAAAACGGTA CCAAGTGTCA AAATCTTGGC CTTGAAGGTG CGATTTGGGA 
    TCCGCAATGA AGCCAAGTTG CTGCCCGTCT TTCTCAGATG CTTTCCCAAT 
    GTTGAGACAT TACATGTCAT GTCAGATGAT GCTCATGATC CTACCGGCAA 
    GCTCAATCTC AAGTTCTGGC ATGACGTCGG CCCAATCGAG TGCCTGCACT 
    CACACGTCAA TAAGGTGGTG TTTCACATGT TCAGAGGGGA GCGGAGCGAG 
    CTCGCGTTCC TCAAGTTCAT CCTGGAGAGG GCCGAGGCAT TGCAGAAGAT 
    TGTGGTTGTG TTGGCCAACA GAGACCAGGC CTGGGTGGAC GAGATGCGCG 
    CCAAGCTGAG GCCCCTGGCC ATGGCGAAAA GGGCCAGCAA GAACCCTACG 
    CTCTTGATCG TTGCGCTTGA AGGTGGTAGT GCTTGGTCCT TCCACAGAGC 
    ATCCGATCTC TCTGTGAATG ACCCTTTTGA CTACTGCTGA AGCTCAAGAT 
    GATCAGGTTT CAGTATGACA GTACCTACAT GACAGCCAGT TAGCCATTTT 
    CAGATGCTTG ACAAATTTTG CACGACCTAT ATCAGCTCTG ACAAGGATAA 
    GCAGAATTTG CTGTCACAAC TAGTAAGTCT TAACAAATAC TATTTTATTC 
    TTGGAGAATG GGAAGCTTCA TGCTTCAGTA ACTACATAAT GCCAGATATT 
    CTTTCAGATG ATACAGTAGA TAATAGGCAT GTCTTATGTT TTACTAGCAC 
    AGACAATGTC AGCTCCCACA AGCATGAGCA CATATTTGGC TGTAACAAGC 
    ATGAGTACAA CTCTTAACTT GTGGTCTGTG GAAGTGAGAT TTTTGTTGCC 
    ACACATGCCG GGTATAGGTG AAAGTTTGCA GAAACTACTC ATATCAACAC 
    ATATATTTGC AAGAGCTACT TTCGATCGTC GTGTCATGTA TGCTCACAAA 
    CTGAATTGAA GCATTGTTGA TGCAACTTTG GTTATCTGCA AGGTTTAACT 
    AGCTGTTTGC TGCTATAGAT GTGTGGTCCA ATGGTTCATC TTTGATCAGA 
    GTGCATTGTG TATGGCTGTG TGCTGTGCAT GGAATCATAT TGTCATAGCT 
    GTTAACATGG TACAAATTAC TCCTAGCATG TGAATAGAAA CCATGTGTGT 
    GGTCACTTGG ATTGGTTGTC CACATTGGAC TATCAGGCTG CCCTGGTGTT 
    CGTGAAGTTG TAACCAAACG TAGGCACAAG CAGCTGCAGG GCTCCTGAGC 
    AATTTGGCTG GATTATCTGA TAGCAGATCA GGTTTTCTCA ATGTTTTGTT 
    TCCGGGGTGA CATGTGCATA TATCACTTTT GGTTCCGGGG TGATAGCAGA 
    GCAGGATGCA CACAATCATG AAGACTTATA TGGCACTTGG TAACAAATGT 
    ACAATAATAG ACGCTCAGAA GCTTCCTTTG CTCATCTGTA TCTAAATTAT 
    CTGTCAGTTC TGGAGAACAA TCAGAAAAAA AAAAGGTGAA GCTTCCTTTT 
    G

    Gene models with high sequence identity

    1. AT1G13570.1 [+] show detail - F-box/RNI-like superfamily protein
      E-value: 3e-08; Score: 58.20

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    ProfileScan F-box domain, cyclin-like 8.57
    superfamily F-box domain, Skp2-like 2e-09
    HMMPfam FBD 4.7e-11
    HMMPfam F-box domain, cyclin-like 2e-06
    Gene3D no description 0.0002

    See the detailed result >

    AT1G13570.1

    Model type
    Protein coding
    Short Description
    F-box/RNI-like superfamily protein
    Computational Description
    F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56370.2); Has 1866 Blast hits to 1838 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1866; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR