K38345

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38345

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38345

Determination of introduced cDNA(s)

  • J013094D16 - Rice Full-length cDNAs - Original: J013094D16

    full reading [+] show sequence

    Nucleotide sequence: J013094D16 - full reading 
    TCGGTCTCCA TTTCGCGTCT CCTCCTCCTC CTCCTCCGGC CATCTCACCC 
    TCCCGGCGAG CAGCGAGCGG GAGGCCTCCG CCACCGCCGC CGCCGCCGCC 
    GCCGTCGCCG CCCGATGGGG AAGCCGGGGA AGCTAGCGCT GCCCTCGCAC 
    GAGTCAACCA TCGGCAAATT CCTGACGCAG AGCGGGACGT TCAAGGACGG 
    CGATCTGCTC GTCAACAAGG ACGGCCTCCG CATCGTCTCG CAGAGCGAGG 
    AAGGGGAGGC CCCTCCTATA GAACCTTTAG ATCATAATCA GTTGAGTCTA 
    GATGATCTAG ACGCAATCAA AGTTATCGGT AAAGGTAGTA GTGGAATCGT 
    GCAGTTGGTT CGCCACAAAT GGACTGGCCA GTTTTTTGCT CTGAAGGTAA 
    TACAACTCAA TATCCAGGAG AATATACGCA GACAGATTGC GCAGGAATTG 
    AAAATCAGCT TGTCAACACA GTGCCAATAT GTTGTTGCAT GCTGTCAGTG 
    TTTTTACGTT AATGGTGTCA TTTCAATTGT TTTGGAGTAT ATGGACAGTG 
    GCTCTCTCTC AGATTTCCTG AAGACAGTTA AAACCATTCC AGAGCCCTAC 
    CTTGCTGCAA TCTGTAAGCA GGTGCTAAAA GGACTGATGT ACTTACATCA 
    TGAGAAGCAC ATCATACACC GAGATCTGAA GCCGTCAAAT ATATTAATAA 
    ATCATATGGG TGAAGTAAAA ATATCCGACT TTGGTGTTAG TGCCATCATT 
    GCTAGTTCCT CGGCACAACG AGATACATTT ACTGGGACAT ATAACTACAT 
    GGCGCCAGAA AGAATCAGTG GGCAAAAACA TGGTTATATG AGTGATATCT 
    GGAGCTTGGG CCTCGTTATG CTAGAATTGG CCACTGGTGA ATTTCCATAT 
    CCTCCTCGTG AAAGCTTTTA TGAACTCCTT GAAGCTGTTG TCGACCACCC 
    ACCACCTTCT GCTCCATCAG ACCAGTTTTC AGAGGAATTC TGTTCATTCG 
    TCTCTGCATG TATCCAAAAG AATGCTTCGG ATAGGTCATC TGCACAAATC 
    TTATTAAATC ATCCATTCCT GAGCATGTAT GACGACCTGA ATATAGATCT 
    TGCTTCGTAC TTCACAACCG ATGGATCTCC GCTTGCCACC TTCAATACAA 
    GCAACCGATA TGATGACAGA TAGTCTGATG CAACACTGCG TCATCATCTA 
    GCTCGAAGGA TGATCCTTTG GCTGTCCATC TGTAGAATCT ACCATCTACC 
    TAACTGGCCC CAAATGTTTC GTGTATTTTT TGGGAGAAAA CTTTGCCCTG 
    TGTACTGAGC TGGGATTGAT GTCTTTGATA TGTAAATTTC GCGTAATTTC 
    ATATGTAGAA CAATTCTAGG ATCATTGGGC ATTGAAGTTT TGTTTGGCCG 
    TGCACCAGGA TGATCTGTTC TTGATCGCTT TACCTTTGTT TCTCACTTCT 
    GTAACTAAAA CCTATATTTA CCATTTACCG GATTGTTCAT GGCCTCTTCT 
    GGGCAAGTCG GTGTCGACTG AAAGTCTC

    Gene models with high sequence identity

    1. AT4G29810.1 [+] show detail - MAP kinase kinase 2
      E-value: 1e-124; Score: 443.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan TYRKINASE 1.9e-09
    FPrintScan TYRKINASE 1.9e-09
    FPrintScan TYRKINASE 1.9e-09
    HMMPanther MITOGEN ACTIVATED PROTEIN KINASE KINASE, MAPK 8.8e-215
    HMMPanther MAPKK-RELATED SERINE/THREONINE PROTEIN KINASE 8.8e-215
    ProfileScan Protein kinase, catalytic domain 45.446
    superfamily Protein kinase-like domain 2.6e-82
    Gene3D no description 1.6e-55
    HMMSmart Serine/threonine-protein kinase domain 6e-81
    HMMSmart Tyrosine-protein kinase, catalytic domain 3.4e-14
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPfam Serine/threonine-protein kinase-like domain 1.9e-63

    See the detailed result >

    AT4G29810.1

    Model type
    Protein coding
    Short Description
    MAP kinase kinase 2
    Curator Summary
    encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2.
    Computational Description
    MAP kinase kinase 2 (MKK2); FUNCTIONS IN: MAP kinase kinase activity, kinase activity; INVOLVED IN: cold acclimation, MAPKKK cascade, response to salt stress, response to cold, defense response, incompatible interaction; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: MAP kinase/ ERK kinase 1 (TAIR:AT4G26070.3); Has 131554 Blast hits to 129384 proteins in 4297 species: Archae - 179; Bacteria - 15130; Metazoa - 48544; Fungi - 12993; Plants - 32706; Viruses - 527; Other Eukaryotes - 21475 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR