K38422

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38422

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38422

Determination of introduced cDNA(s)

J033089I16 - Rice Full-length cDNAs - Original: J033089I16

full reading [+] show sequence

TGAGGGAGAC CCAACCCAGC AAGCAAGCAA ACCCAAACCC ACCCACCTCC 
GCTCCGCGGC CGTCTTCTTC TTCCCTTTCT TCCACCGCAA GAAGAAGAAG 
AAACCCCACC CGAGCCAAGC CCCACACACA AAGCGAGCGA CTCGGCGGCG 
GCGGCGATGG CCACGGTGGC GATGGACATC TCCAAGCCCC CTCCCGCGGC 
GGGCGGCGAC GAGGCTGCGG CGGCGAAGGG GAGGGGCGGC GCCGGAGGAG 
GAGGTGGGGA GGGGCTGCGG CAGTACTACC TGCAGCACAT CCACGACCTG 
CAGCTCCAGA TCCGGCAGAA GACGCACAAC CTCAACCGCC TCGAGGCCCA 
GCGCAACGAC CTCAACTCCC GAGTTAGAAT GCTCAGGGAA GAGCTGCAGT 
TGCTTCAAGA ACCTGGCTCG TATGTTGGTG AGGTGGTGAA GGTCATGGGT 
AAATCAAAGG TTCTAGTGAA GGTACATCCA GAAGGCAAAT ATGTGGTGGA 
TATTGATAAA AGCATTGATA TTACAAAGAT CACACCTTCA ACAAGAGTTG 
CTCTTCGAAA TGATAGCTAT ATGCTTCATT TGATCCTGCC AAGCAAAGTT 
GATCCGTTGG TCAATCTTAT GAAAGTTGAG AAGGTTCCTG ATTCTACTTA 
TGATATGATT GGAGGTCTTG ATCAGCAAAT CAAAGAGATC AAAGAGGTCA 
TTGAACTTCC TATCAAACAT CCAGAGCTAT TTGAGAGTCT TGGAATTGCC 
CAACCAAAGG GTGTCCTTCT CTATGGCCCT CCAGGCACAG GAAAAACATT 
GTTGGCACGT GCAGTTGCTC ATCACACTGA CTGCACCTTC ATCAGGGTGT 
CCGGTTCCGA GTTAGTTCAG AAGTACATTG GTGAGGGTTC TCGGATGGTC 
CGTGAACTCT TTGTTATGGC CAGGGAACAT GCACCATCCA TTATTTTCAT 
GGATGAAATA GACTCCATTG GATCTGCTAG GATGGAGTCT GGAACTGGCA 
ACGGTGACAG TGAAGTCCAG CGAACCATGC TTGAGCTTCT GAACCAACTT 
GATGGTTTTG AAGCATCAAA CAAAATAAAG GTTCTGATGG CAACAAATAG 
GATAGACATC TTGGATCAGG CCCTTCTGAG GCCTGGTCGC ATAGACAGGA 
AAATTGAATT TCCTAATCCT AATGAGGATT CACGCTTTGA TATCTTGAAG 
ATTCATTCAA GAAAAATGAA CTTGATGCGT GGTATTGATC TGAAAAAGAT 
CGCTGAAAAG ATGAATGGGG CTTCAGGAGC CGAGCTCAAG GCGGTCTGCA 
CAGAAGCTGG AATGTTTGCT CTTCGTGAGA GAAGGGTGCA TGTAACACAA 
GAGGACTTTG AGATGGCAGT GGCGAAGGTG ATGAAGAAAG ACACGGAAAA 
GAACATGTCC CTACGGAAGC TCTGGAAGTG AAGCTCACGT CTTAATAGCC 
TAAGCTTTCA CTGCATCGCT GAAGCAGCGG AAGCATGTAA CTGCATGTTG 
TGGACTTCTT CCATGTGCTT TAGAATATGT TGTTCCATGG TTAACTTTCA 
GATTTTAAGA TGCACCTATG ATAATATGAT GTTGAAAAGT TTAATTTATT 
GAATTGGCTA GATACACGAT ATGACATTGC TTTCTTGCAA TGTACCCCTA 
CGCTGCCTAC TTGGGTTGTT TGCTTGCCTG TTTTGTGATC TCTCAAGTCA 
GAACATTTGA TTTTTCACCC GCTGTTTCGC CATGTGGGTG GTTTTGCTGT 
GTCATGATTG CTGTTGAGAT GT

Gene models with high sequence identity

AT5G19990.1 [+] show detail - regulatory particle triple-A ATPase 6A
E-value: 0; Score: 699.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	26S proteasome subunit P45	2.5e-171
PatternScan	ATPase, AAA-type, conserved site	0
Coil	coiled-coil	0
Gene3D	no description	2.2e-58
Gene3D	no description	2.9e-19
HMMPanther	26S PROTEASE REGULATORY SUBUNIT 8	6.3e-253
HMMPanther	26S PROTEASE REGULATORY SUBUNIT	6.3e-253
HMMPfam	ATPase, AAA-type, core	1.1e-42
superfamily	P-loop containing nucleoside triphosphate hyd	4.9e-74
HMMSmart	ATPase, AAA+ type, core	4.7e-23

See the detailed result >

AT5G19990.1

Model type: Protein coding
Short Description: regulatory particle triple-A ATPase 6A
Curator Summary: 26S proteasome AAA-ATPase subunit
Computational Description: regulatory particle triple-A ATPase 6A (RPT6A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G20000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR