K38626

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38626

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38626

Determination of introduced cDNA(s)

  • J033132E13 - Rice Full-length cDNAs - Original: J033132E13

    full reading [+] show sequence

    Nucleotide sequence: J033132E13 - full reading 
    GGTGTTTCCC TCTTGCCGCT TCTCTCTTCT TCTTCTTCTT GCAGCGGCCG 
    TGCTCGCCAC AACGATCCAT GGAGGGGTGC CAATTGGTAG CGAGGTGTAG 
    TAGTAGTAGT AGCAGTAGCA GGATGGAGGT GGAGGAAGAG GCGTTCTTTG 
    ACACGCGGGA GGAGCTGCTG CCGCCGTCGC CGGCGGCGGC ATTGCCGTGG 
    TCGGGTGGGC TCGACAGCGT GCGGCAGCGG AGGGAGCGGT TCATGCGAAG 
    CATGGGCCTG GAGCGCAGCC CGAGCCTCCG CCAGGCGGAT TTCGCGGACG 
    TCGTGGGCGA TGTGGAGGAG GAGGGTGAGG TGGCGGCGGA GGCGGAGATC 
    GGGAGGTGGT CGTCGCAGTC GGACGAGAAC GAGTGCTCCA TGTCGAGCTG 
    GTCGACGGAG GAGACGACGA GCTACGACGA CGGCGCGTCG GATGACAACT 
    CCGTGAGTGG ATCCGGCAAG GCGAGCAGGA GCTTCAGCTC GCTGTCGTTC 
    ATCCAGAGGC TCATGAGCCG CAATGGCAAG CCTTCTGGTG CTCCGAAGAC 
    GATCGACAGG AGGAGAAATG GGTGGCTCCG GAGGCTGGGC GTCAGTGCTT 
    GTGTTGTGGA TAGTGGAGCA GCAGATGAAG CCAGCACCAG TTCTTCAGAT 
    AGTGAGCAAA TTGGGGCTGG GAGGTATGAA AGAATCAAGG TTCACTCGTA 
    CCGGAAGCGG TCGAAGGAAT TGTCCGCCGT GTATCAGGGG CAAGTGATCA 
    AAGCACATGA TGGTGCCATC CTGACGATGA AGTTTAGTCC TGATGGGCAG 
    CTTCTTGCAA CCGGTGGAGA AGATGGAGTT GTCAGGGTTT GGGCTGTCAT 
    GCAGTCCGAG GACTGCAAAA TTCCACTGGA TGATCCTTCT TGCGTCTACC 
    TAAAAGCGCG GCGCAAGTAT GGGCTTGCTC CTGTGAATGC CGAGAGCGAG 
    AAGAAATCGA AGATCAATGG CCTGAAAAAA TCCGATTCTG CTTGTATTGT 
    GGTTCCAACG ATGGTTTTCC AGATCTCAGA GGAACCAGTG CATGAGTTCC 
    GTGGGCACTC TGGTGATGTG CTTGATTTGT CATGGTCGAG CGATAAGCAT 
    CTACTGTCAG CATCAACAGA CAAAACTGTT CGCATGTGGG AAATTGGATA 
    TGCAAACTGC ATCAGAGTTT ATCCACATAG CAACTTTGTG ACTTGTGTCC 
    AATTTAATCT AGCTGACGAG AATCTCTTCA TTAGTGGATC AATTGATGGC 
    AAAATTCGTG TTTGGGACAT TACTAGAAGC AGTGTTGTGG ACTGGGTGGA 
    TATTAGAGAC ATAGTAACAG CAGTTTGTTA CCGGCCTGGT GGAAAGGGAG 
    TGGTGGTTGG TACTATTACT GGAAATTGTC GCTTCTATGA AATATCTGAC 
    AATCTGCTGA AGCTAGAAAC ACAAATTGCT CTCAATGGAA AGAAGAAATC 
    ATCTCTCAAA AGAATCACAG GCTTTCAGTT TTGCCCAAGC AACCCAAGTA 
    AACTAATGGT GACATCTGCC GATTCGAAGA TCAGAATACT TGATGGGACC 
    AATGTGATTC AGAATTATAG TGGACTCCGA AGTGGTTCTT GCCAGTTGTC 
    AGCAACATTC ACTCCAGAAG GGCAGCACAT AATTTCTGCC AGTGAAGACT 
    CCAACGTTTA TGTTTGGAGC CATGAAAACC AGTATGAGTG TGCATGCAAA 
    CAAGCAAAAA CCACACAGAC ATCTGAGCAT TTCCGGTCCA ACAATGCAGC 
    CATTGCAATA CCATGGAATG GCACAAAACC AAGAAGCCCA GTTCCGTTGT 
    CGTCCCAAAT TTTACCACCA CAAGGAGATA CTTTCTGGTC AATGAGCAAG 
    GCTATCAAAT ACAATTCAAG CCTCTGTGGA AAGGATTCTT CCATTAAAAA 
    AATTGTGTCA ACGCCTGCTG CTCCTGGTAT TTTCAATCTG AACCAGGAGT 
    TCTTCATTGA GTCCTCTTGC AAAAGTTCAG CAACTTGGCC AGAGGAAATG 
    CTACCATCTA CCACAGCCAG TGTAAATTTG GACGAGTCAC AGTTCAAGCT 
    CTTAAGGAAC TGTTTCCAAG GAACATCAAA CTCCTGGGGT CAAGTGATAG 
    TTACTGCAGG ATGGGATGGC AGGATTAGGT ATTTCCAGAA TTTCGGTTTA 
    CCAGTGCATC AGTGAATAGT TTGAGCATTG GATGGAAGTA AACGCAGCAT 
    TGGCACCTCA CATGGCCTCA AGAAAAGCAC CCGTGCACCC AGCTATGCTG 
    GCCCAGCGTG TGGTTACTTG GTACAAGACA TCACATGCTT GGTGCTCCTG 
    CTGAATTGTA CATGGACCAG CGTTGTACAT AATCAAACCA GTGGTCCTTT 
    GAGATCTCTA CATCAGTGGT TGTTCGTGGC AGGCCCGGTA GCTTGTACCT 
    TTTGTAGAAA TCTTTCAGTG TAGATCAGAT TTGTTCTTAC TCCCCCCACT 
    CAATTGCTCA TTGAAATGAT AGAAATTTTA GTCTCATCTG AGTG

    Gene models with high sequence identity

    1. AT5G53500.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 5e-124; Score: 442.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan WD40 repeat, conserved site 0
    ProfileScan WD40 repeat 2 15.789
    ProfileScan WD40 repeat 2 13.717
    ProfileScan WD40 repeat 2 12.313
    ProfileScan WD40 repeat 2 9.372
    ProfileScan WD40-repeat-containing domain 18.906
    FPrintScan G-protein beta WD-40 repeat, region 6.1e-07
    FPrintScan G-protein beta WD-40 repeat, region 6.1e-07
    FPrintScan G-protein beta WD-40 repeat, region 6.1e-07
    HMMPanther WD REPEAT DOMAIN 44 4.3e-129
    Gene3D WD40/YVTN repeat-like-containing domain 9.5e-56
    HMMSmart WD40 repeat 2.1e-08
    HMMSmart WD40 repeat 1.4e-10
    HMMSmart WD40 repeat 5.7e-08
    HMMSmart WD40 repeat 7.8
    HMMSmart WD40 repeat 0.47
    HMMSmart WD40 repeat 0.15
    HMMSmart WD40 repeat 100
    superfamily WD40 repeat-like-containing domain 5.7e-55
    HMMPfam WD40 repeat, subgroup 2.2e-09
    HMMPfam WD40 repeat, subgroup 2.4e-10
    HMMPfam WD40 repeat, subgroup 6.4e-07
    HMMPfam WD40 repeat, subgroup 0.00077
    HMMPfam WD40 repeat, subgroup 2

    See the detailed result >

    AT5G53500.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G24320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR