K38841

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38841

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38841

Determination of introduced cDNA(s)

  • J023015E12 - Rice Full-length cDNAs - Original: J023015E12

    full reading [+] show sequence

    Nucleotide sequence: J023015E12 - full reading 
    GTTTATCACC ATATATTAAC AAAGGTGCGG CCTCTAACGA GGTTCAACGC 
    TTCTGCACCT CTGATTTTCA CATGGTATCA GAGCCTATCC ATCCACAAAA 
    TCGCATCTAA TCCAACTCAT GGCGAGTTCG TCGAAGACGG CGGCCGGGAA 
    TCCTCTCGGC GGGAACGCGA TCTCGGAGAA ACTCTCCAAA TCAAACCATG 
    CGCTATGGAA AGCGCAGGTC ATGGCGGCTG TACGAGGAGC TCGCCTTGAG 
    GGGCATCTCA CCGGTGCCAC CAAAACTCCC AACGCCCTGA TCACGACGAC 
    AGCAGGCGAC AAGGGAGAGA AAGAAGTCAC TGTTCGCAAT CCAGAATTTG 
    ATGATTGGGT TGCAACCGAT CAGCAGGTTC TAGGATTCCT GCTCTCCACC 
    CTAGCTAGAG ACGTTCTGGC ACAGGTGGCC ACCTGCGGCA CGGCTGCAGC 
    AGCATGGCAG ATGCTGGAGG AGATGTACTC CTCCGTCACG AGGGCGCGCT 
    TCATCAACAC TCGCATCGCT CTCTCCAACA CCAAGAAGGG CACTCTCTCC 
    ATCAACGAGT ATGTCTCCAA GATGAAGGCC CTCGCTGATG AGATGACGGC 
    TGCCGGCAAG ATCGTTGATG ACGATGATCT CATCTCCTAC ATCATCGCCG 
    GCCTCGACGA CACGTATGAA CCTGTCATCT CCACCATCGT TGGCAAGGAC 
    ACCATGACGC TGGGAGAAGC CTACTCTCAG CTGCTCAGCT TTGAGCAGCG 
    TCTCGCGCTT CGTCACGGTG GAGACTCTTC TGTCAATTTG GCGAACCGAG 
    GACGTGGCGG TGGTGGAGGA CAACAACGCG GCGGCAACAC CGGCAACGGC 
    GGCCGCGGCC GTGGCGGCAA CAACAATGGC GCTAACCGCG GCAGGGGACG 
    CGGCAACAAT GGCGGCGCAC GACCACCGGG AGGCGTCGAC AACAGACCTA 
    AATGTCAACT CTGTTACAAG AGGGGACACA CGGTAATCAA CTGCTGGTAT 
    CGCTATGATG AAGATTTTGT TCCCGATGAA AAATATGCAG GATCGGCAAC 
    ATCTTATGGG ATTGATACAA ATTGGTACGT CGACACGAGT GCGACGGACC 
    ATGTGACTGG CGAACTGGAC AAGCTCACGG TTCGCGATCG CTACAAGGGG 
    CAAGATCAAG TTCACACCGC AAGCGGTGCA GGATCTGGCC ACGAAGAAAC 
    TTCTGTTTAG GGGACCATGC CGGGGGCGAC TGTACGCTCT TCCATCTTCA 
    TACCTCATGA ACGTCCTCGT CCTCTAAAAG AAGCCTTTGG AGCCATCAAG 
    CCATCCTTTG AGCGATGGCA CAGTCGCCTG GGTCATCCAG CCTCTCCAAT 
    TGTGGAGAAA GTCATTAGCA AAAATAATCT TCCTTGTTTA GCTGAGTCAA 
    ATAAACAGTC GGTTTGTGAT GCATGTCAAC AGGGTAAAAG TCATCAATTG 
    CCCTATTCTA GATCTTCTAG TATGTCGAGT CATCCTTTGG AACTTATTTA 
    TTCTGATGTT TGGGGTCCTG CCCTCACTTC TGTTGGGGGC AAACAATATT 
    ATGTGAGCTT TATTGGTGAT TATAGTAAAT TTACTTGGCT TTATTTGATT 
    AAGC

    Gene models with high sequence identity

    1. AT5G48050.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis th...
      E-value: 7e-07; Score: 52.80

     

    InterPro Scan Digest

    See the detailed result >

    AT5G48050.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR