K38842

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38842

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38842

Determination of introduced cDNA(s)

J013129L05 - Rice Full-length cDNAs - Original: J013129L05

full reading [+] show sequence

GGCCCGGAAA ATTTCCCCAA TCCGACGCCC TCCTCCTCCT CCCCCCTCCC 
CCCTGCTGGA TCTCCTCCAC TCCCCATGGT AGCCTCCCCC GCCCCGCGCT 
GCTGACCCCT GGGCCCCACC GCCGCTTCCG CCGCCGCTCC CGTTTCCCCC 
GGCTCTCGCT CTCGCGCGAG CCGTAGCCAT TGCTGGGGAG GAGGAGGAGG 
GGAAAGCTCG AGGTATTTGG ATGCGCGCGA GCCGATGGCG ACGCCGGCCG 
CCGAGAAGCC CGACGGGGTG GAGATCCGCG AGGTGTGGGA GGACAACCTC 
GAGGCCGAGT TCGCGGTGAT TCGGGAGATC GTTGACGACT TCCCGTACGT 
CGCGATGGAC ACGGAGTTCC CGGGCGTCGT CTGCAGGCCG CTCGGGACGT 
TCAAGTCCAA CGCCGATTTC AACTACGCAA CGCTCAAAGC CAACGTCGAC 
ATGCTGAAGC TTATCCAGCT TGGTTTAACC TTCTCGAATG AGCATGGTGG 
GCTCCCGTCG CTTGGCCCCG AGGGTCGACC TTGTGTTTGG CAGTTCAACT 
TTCGTGGCTT CGATCCCCGG ACCGACGTCG CTGCTGCAGA TTCCATTGAC 
TTGCTCCGGC GCAGCGGTAT TGACTTCACC CGTCACTCGG CTGACGGCGC 
TGATGCTCGC CGCTTCGCTG AGCTTCTCAT GTCGTCGGGC GTTGTGATGA 
ACTCTGAGGT TCGCTGGGTT ACGTTCCATA GCGGATACGA CTTTGGCTAC 
TTGCTCAAGT TGCTCACCGG CACATACCTG CCAGACACGA TAACCGGATT 
CTTCGACCTC ATCAGGATAT ATTTCCCCGT CGTGTATGAC ATCAAGCACT 
TGATGCGGTT CTGCAACAGC CTCCATGGTG GGCTGAACAA GCTTGCCGAG 
CTGCTTGATG TTGAGCGCGT TGGAATTTGT CATCAGGCTG GTTCCGACTC 
GCTGTTGACC GCGCTGTCAT TCAAAAAGCT CAAGGAAGCA TACTTCAATG 
GGTTAACCGA GAAGTATGCC GGTGTGTTGT ATGGTCTTGG CACAGAAGGT 
GGGGAGACCT CCTCTGCTGC TCACTAAGTA ATGGATAGTT AAATAAAGGA 
TGAACTATGT TTGC

Gene models with high sequence identity

AT2G32070.1 [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
E-value: 6e-107; Score: 384.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Polynucleotidyl transferase, ribonuclease H fold	1.3e-107
HMMPanther	CCR4-ASSOCIATED FACTOR	1.1e-137
HMMPfam	Ribonuclease CAF1	8.5e-63
Gene3D	no description	3.8e-104

See the detailed result >

AT2G32070.1

Model type: Protein coding
Short Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G80780.2); Has 941 Blast hits to 931 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 149; Plants - 385; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Link: InterPro Scan - TAIR