K38921

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38921

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38921

Determination of introduced cDNA(s)

  • J023139P14 - Rice Full-length cDNAs - Original: J023139P14

    full reading [+] show sequence

    Nucleotide sequence: J023139P14 - full reading 
    GATCGCCACC TCGGCGCATC CACGCAACCC ACCCGTCGCG AGTCGCGAGC 
    AGATCAAAAA CCCCATCGCC GCGGCGATCA CCGGAGGGAC CAGGCCGGGC 
    GGCCATCCGT ACTCCGCCGC GATGATGAAC GACGGCGATG TGGCGCGGCA 
    GCTGAAGCAG ATGACGGACT TCATCCGCCA GGAGGCCGTC GAGAAGGCCG 
    CCGAGATCGA GGCCGCCGCC GCCGAGGAAT TTCAAATCGA GAAACTACAG 
    CTGGTGGAAG CTGAAAAGAA GAGGATCAGG TTGGAATTTG AACGGAACGA 
    GAAGCAAGGT GATATCAAGA AGAAAATTGA ATACTCAAAG CAGCTCAATG 
    CTTCCCGACT TGAAGTTCTG CAAGCTCAAG ATGATTTAGC GATGTCTATG 
    TTGGAGGCAG CAGGGAAAGA GCTACTGTAC ATAACCCGAG ATCACCATGT 
    ATACAAGAAT CTTCTTAGGA TATTTATTGT TCAGAGCTTG CTGCGTTTGA 
    AGGAGCCAGC TGTGATTCTG CGCTGCAGGA AGGAGGATCG TGAGCTTGTT 
    GAATCAGTTT TGGAGTCTGC AAAGAATGAA TATGCAGACA AAGCAAATAT 
    ATATCCTCCT GAAATAATGG TAGACCGTAA TGTCTATCTG CCTCCTGCTC 
    CCAGTCATTA TGAGGCACAT GGACCCTCCT GCTCTGGTGG AGTTGTGCTA 
    GCTTCCCGAG ATGGAAAGAT AGTCTGTGAA AATACATTGG ATGCTAGACT 
    AGAGGTGGTT TTCAGAAAGA AGCTACCAGA GATTCGTCGA AGCCTTCTTG 
    GGCAGGTAGC TGCTTGACCG ATTCATAAAT ACAGGATGCT GCACAATACC 
    GTTTTCTTCT GCATGATGGT GTCAAAGAAA GCATTTTGGC AGTTAAAATG 
    ATTTATCACT TTGCTCAAGT CTGTTACATA TATATTTTTT ATAGGGAGCC 
    ACTGTCATCA AACTACAGAC CTTAGTATTG CCGATAGCGA ATAAATTGAT 
    ATGTTCATGT TGCTCACGAT TTCTCATAAT AAGGCCTAAG AGGTGTAGTT 
    ATCCCATTTA TATGTTCATC TTTTCTCACA GAAGACAATC CATTGTCATT 
    TATTCATCTG TTATTTGTTT TTGTTTTCAT GGAAATAATA TACCAAGGCC 
    TCTCTTAGAA TG

    Gene models with high sequence identity

    1. AT4G11150.1 [+] show detail - vacuolar ATP synthase subunit E1
      E-value: 1e-71; Score: 267.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPanther VACUOLAR ATP SYNTHASE SUBUNIT E 2.2e-93
    HMMPfam ATPase, V1/A1 complex, subunit E 6.4e-67

    See the detailed result >

    AT4G11150.1

    Model type
    Protein coding
    Short Description
    vacuolar ATP synthase subunit E1
    Curator Summary
    Encodes a vacuolar H+-ATPase subunit E isoform 1 which is required for Golgi organization and vacuole function in embryogenesis.
    Computational Description
    vacuolar ATP synthase subunit E1 (TUF); FUNCTIONS IN: proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: in 7 processes; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 18 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1/A1 complex, subunit E (InterPro:IPR002842); BEST Arabidopsis thaliana protein match is: vacuolar H+-ATPase subunit E isoform 3 (TAIR:AT1G64200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR