K39005

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39005

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39005

Determination of introduced cDNA(s)

  • J013168A08 - Rice Full-length cDNAs - Original: J013168A08

    full reading [+] show sequence

    Nucleotide sequence: J013168A08 - full reading 
    GCGAGTATAC ACAATTGCAG CTAAACCAGA GGAGAGAGAG AGAGGAGGTG 
    GGAACTGGGA AGAAAAAAAT GGCGGCTTTG CTCCGCCACG CCGCGGCGGC 
    GGCGGCGGCC GTGGTCCTCC TCATCGCGGC GGCCGCCTCC ACCGACGGCG 
    CCACCAGCTT CCACGCCTCG GACCCAAACC TCGGATCCGC CCGCGTCGTC 
    TTCCAGACAA CTCATGGTGA CATTGAGTTG GCTTCTTTCC TCATGTTGCT 
    CCTAAGACAG TTGAACACAT TTACAAACTT GTGAGGCTTG GGTGCTACAA 
    CACAAATCAC TTTTTCCGGG TTGACAAGGG TTTTGTTGCA CAAGTTGCTT 
    CTGTTGTGGG TGGTAGAACT GCCCCCATGA ATGATGAGCA GCAAGAGGAA 
    GCAGAGAAAT CGGTTGTTGG TGAATTTAGT ACTGTCAAGC ATGTCAGGGG 
    GATTCTGTCC ATGGGAAGGC ACTCTGATCC AAACAGTGGT GGTTCTTCCT 
    TTTCCATCCT TCTTGGAGAT GCACCACACC TTGATGGACA GTATGCTGTA 
    TTTGGAAGGC TCACAAAAGG TGATGATACA TTAAGAAAAC TTGAGCAACT 
    TCCAACTCGT AGAGAAGGCA TATTTGTAAT GCCTATTGAG CGTATCAGCA 
    TTCTGTCAAC ATACTATTAT GATGTTGATT TAGAGAGCTG TGAAGCAGAA 
    AAGTCCATTC TTAGGAGGAG ACTTTCTGAA TCAGCATCAG AAGTTGAGAG 
    ATGGAGAAGA AAGTGCTTTG CATGATGCTG GAGTTATGTT AGCAGAACAG 
    GTTCAAGCTT CTCCCTGACT TGATTGCTGA GGCCTGAATA TTGAAAGCAT 
    GGCGAGGGAA CCCCTGGAAT GGAATTTGTA TGTTGTGTGC ATTTATCCTA 
    GCAAAATGCT GTAACAGTTC AATAGAAGTG TGGATAATTC TCTCTTCTTT 
    TTTTCTGTTA ATCTTTCCAG CACACTTGGA TCTGTACACA ACTACACATC 
    ATACTGAATT TGTCATTGCT TTTACAAAAA ATACATTGTA CTAGTATCTT 
    ATTTTACGAA AATATTGTAT ATTACCATCT CCATTTCTGC

    Gene models with high sequence identity

    1. AT1G26940.1 [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
      E-value: 2e-80; Score: 35.80

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 16.654
    superfamily Cyclophilin-like 1e-29
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 9e-08
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 9e-08
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 9e-08
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 9e-08
    HMMPanther PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (CYCLOPHI 4.7e-105
    HMMPanther CYCLOPHILIN 4.7e-105
    Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2.1e-27
    Coil coiled-coil 0
    HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 5.9e-32

    See the detailed result >

    AT1G26940.1

    Model type
    Protein coding
    Short Description
    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
    Computational Description
    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: cyclophilin71 (TAIR:AT3G44600.1); Has 11471 Blast hits to 11465 proteins in 2220 species: Archae - 104; Bacteria - 5913; Metazoa - 1282; Fungi - 864; Plants - 581; Viruses - 0; Other Eukaryotes - 2727 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR