K39248

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39248

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39248

Determination of introduced cDNA(s)

J033060D18 - Rice Full-length cDNAs - Original: J033060D18

full reading [+] show sequence

GGATGGAGCC ACCTCAAAAG CCCCCGCCCA TCCACCGCCA CGCGGCGATC 
CAACCCCCTT CCCCTTCGCC GGCGCAGCAT CGGACCTCGC CGCCGCGGCG 
GTTCTTCTGA GCGGGGCCGG GGCGGGGCGG CAGCTGGGGA TTCGTCCCGT 
GCCCCGTGCT CTTCCTCTGC GTGGGCCGGG GCGGAGGGAG GGAGGGGAAG 
TCGGTGGTGA GGTGGCGTGT TGTGTGGCGC AGATGTGAGG GCGGAGGAAT 
GCAGAGGTCG CGGAGAGCCC TTCTGAAGAG GAAGGCGGCG GCGGCGGCGA 
AGGAGGAGGA GGAGGAGGCA GGGGTGGGCG TGGCTACCGC GGCGGCCGCC 
GGGAGGAGGC GGCGGCGGCG GCTGTACGGC TTCTCCGTCT CGCTTGTCGT 
CGCCTGCTGG GTCGTCCTGC TCCTGCTCAA CCCCCTCGTC GGTCATGGGA 
ACGGTCAACG AGATGAAGGG ATTTTTGCGG ATGAAGGAAG CTCTGATCCC 
TCGTTTGATT CTGTTGAGCC TACCTTGAGC GAAGGCTCTG TTGATTCAGT 
TGTACAGCAG GAGAATGGGG AAAATCATGC GTTGCCAGGT GATAGCTGTG 
CTAAACCCGA TGAAAATCAT GTGCTTTCTG AAGAGACACT GCTGGAGAAA 
GATCAGCTTT GCTCCAATGA TGAGGCACAG GGTGATAGCA TGGATGCTCT 
GCCCAAGGAT AACGTTGATC AGGGTGAGAA TCTTCCACGG ACAGATGATG 
ATTCTGTAGT TCATCCAGAG GGGGAGGTGG AGAGCGAAGG TGTTCCAAGA 
CCAGCAAGGT TATCACGAGT TGTCCCTCCT GGTCTTGATG AATTCAAGAC 
ACGAGCGATT GCGGAAAGAG GAAAGGGTGT CCCTAGTGGT CAACCTGGAA 
ATGTGATCCA CAGAAGGGAG CCTAGTGGGA AGTTGTACAA TTATGCCTCG 
GCAGCTAAAG GGGCTAAGGT CCTGGAATTC AACAAGGAGG CCAAGGGTGC 
TTCTAACATC CTAGACAAGG ATAAAGACAA GTATCTCCGC AATCCTTGCT 
CAGCAGAGGG GAAGTTTGTC ATTATAGAGC TGTCTGAAGA AACCTTGGTA 
GATACAATCG CAATTGCAAA TTTTGAGCAC TATTCTTCTA ACTTGAAAGA 
ATTTGAAATG CTGAGCAGTC TGAATTATCC CACAGATAGC TGGGAAACAC 
TCGGGAGATT CACTGTTGCA AATGCCAAGA TTGCTCAGAA TTTTACTTTT 
CCTGAGCCAA AGTGGGCTAG ATATCTGAAA CTCAACTTGC TTAGCCATTA 
TGGTTCCGAA TTCTACTGCA CGCTCAGTAT GCTTGAAGTG TATGGAATGG 
ATGCGGTGGA AAAGATGCTG GAGAACTTGA TTCCAGTTGA GAATAAAAGG 
CTGGAACCTG ATGACAAAAT GAAGGAACCA GTCGATCAGC AAACACAATT 
GAAGGAGCCC ACTGAGGGAA AAGAATCCTC ACATGAACCC CTGGATGAAG 
ATGAGTTTGA ACTAGAAGAT GATAAACTAA ACGGTGATTC ATCAAAGAAT 
GGTGCTCATG ATCAAGTTAC CGAGACAAGG CCAATTCAGG CTGGCAGGAT 
TCCTGGAGAT ACAGTTCTTA AGGTACTAAT GCAGAAGGTG CAATCTCTTG 
ATGTGAGCTT TTCTGTCTTG GAGCGGTATC TAGAAGAACT AAATAGCAGA 
TATGGGCAAA TTTTTAAGGA TTTTGATGCT GATATTGATA CCAAAGATGC 
ACTCTTGGAG AAAATCAAAT TGGAGCTGAA GCATCTTGAG AGAAGCAAAG 
ATGACTTTGC GAAAGAAATT GAAGGGATTC TCTCATGGAA ACTAGTTGCT 
TCCTCACAGT TAAACCAGCT ACTCTTGGAT AATGTCATAA TCAGATCAGA 
ACTTGAAAGA TTTCGGGAAA AGCAGGCTGA CTTGGAGAAT AGAAGCTTTG 
CTGTAATATT CCTGAGTTTT GTTTTTGGAT GTTTAGCGAT TGCTAAGCTG 
TCTATAGGCA TGATATTTAA TACCTGTAGA TTATATAATT TTGAAAAATT 
CGATAGGGTA AAATCTGGAT GGCTTGTGTT GCTGTTCAGC AGTTGCATTA 
TAGCCTCCAT TTTGATAATA CAGTGATGTA CCTATCAACT CCATATAATT 
GCGGCTGCGC TTTGTAATTG CCTGAGGTGT CTAATTCAAA ATCTATTACA 
ATGC

Gene models with high sequence identity

AT1G71360.1 [+] show detail - Galactose-binding protein
E-value: 9e-106; Score: 381.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Galactose-binding domain-like	1.8e-21
HMMPanther	MEMBRANE PROTEIN CH1 RELATED	6e-63
Gene3D	no description	0.0001
HMMPfam	Sad1/UNC-like, C-terminal	1.4e-38
Coil	coiled-coil	0
Coil	coiled-coil	0

See the detailed result >

AT1G71360.1

Model type: Protein coding
Short Description: Galactose-binding protein
Computational Description: Galactose-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Galactose-binding protein (TAIR:AT1G22882.1); Has 1743 Blast hits to 1314 proteins in 210 species: Archae - 22; Bacteria - 165; Metazoa - 539; Fungi - 114; Plants - 96; Viruses - 20; Other Eukaryotes - 787 (source: NCBI BLink).
Link: InterPro Scan - TAIR